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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggtgtgctaaactaaaattaaacgcgtacatacggtgtagacgatcggaggttgcttttcatggctgccaataacacatacatacaatacattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC

Basic information

species Zea mays
transcript GRMZM2G023840_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023840_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g36240.1 (Oryza sativa), 3'ss of exon 2
-----gggtgtgctaaactaaaattaaacgcgtacatacggtgtagacgatcggaggttgcttttcatggctgccaataacacatacatacaatacattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC
         ||  |    |     |  ||   |   |   ||   ||| ||       ||     | | |||   |||  |    |       ||| |    ||||| || ||||| |||||||| |||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
agtcaactagtcattggttctggatctaccaatcttttttgtcatgacaataccgaaatgaaaaccttagct--taattgcttgcattgctcgtacgt---gcagACGGGAGGCCCCGGGTGGATAGTGCCGCTGGGGAGGAGGGACTCGCGTGGGGCGAGCGTGCAGGGCTCCAACAACGACATCCCGGCTCCCAACAACACCC

upper sequence: GRMZM2G023840_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G66390.1 (Arabidopsis thaliana), 3'ss of exon 2
gggtgtgctaaactaaaattaaacgcgtacatacggtgtagacgatcggaggttgcttttcatggctgccaataacacatacatacaatacattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC
                   |||   |  |   ||  |  |    |    |  ||  ||   ||   |  ||||||     ||| |  | | |    |||||| || || ||  | |||   || || || ||  | || ||| |  | || || ||| ||   || |||||||||||||| |||||||| ||||||||| 
------------------gtaagtactcat-cacaattcactacacacaaaattagttg--attattatcaataatttg-acaaatgaaata----acagACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGAGCAAGCTTGAGTGGTTCCAACAACGACATTCCTGCTCCAAACAACACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74235781|gb|DT643695.1|DT643695
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149101123|gb|EE187230.2|EE187230
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148959081|gb|EC905230.2|EC905230
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|78120686|gb|DV539070.1|DV539070
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148991008|gb|EE032447.2|EE032447
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|71443597|gb|DR824647.1|DR824647
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148959082|gb|EE010570.2|EE010570
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|71443598|gb|DR824648.1|DR824648
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|78120685|gb|DV539069.1|DV539069
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|78082083|gb|DV510495.1|DV510495
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148991009|gb|EE032448.2|EE032448
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|78105910|gb|DV524328.1|DV524328
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148969082|gb|EE019808.2|EE019808
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149110132|gb|EE293950.2|EE293950
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|74235780|gb|DT643694.1|DT643694
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149086960|gb|EE176503.2|EE176503
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|110515219|gb|EE019807.1|EE019807
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149099443|gb|EE185483.2|EE185483
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148930079|gb|EE286029.2|EE286029
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149104246|gb|EE289682.2|EE289682
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149029237|gb|EE154701.2|EE154701
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|71422859|gb|DR805881.1|DR805881
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149058844|gb|EE156864.2|EE156864
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149058841|gb|EE156862.2|EE156862
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|91878195|gb|EB408152.1|EB408152
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148966976|gb|EE018120.2|EE018120
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|40335075|gb|CK369145.1|CK369145
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148966977|gb|EE018121.2|EE018121
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149110131|gb|EE293949.2|EE293949
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149058842|gb|EE156863.2|EE156863
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149104247|gb|EE289683.2|EE289683
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGGCCTGGGTGGAT
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGAT
EST: gi|149101124|gb|EE187231.2|EE187231
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|78082084|gb|DV510496.1|DV510496
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCCTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149029238|gb|EE286192.2|EE286192
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|148933091|gb|EE286030.2|EE286030
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
EST: gi|149086961|gb|EE176504.2|EE176504
EST:     TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATG                         ACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC
genomic: TCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 15

GGTCATCGACGAGATCAAGGCCGCGCTCGAGGCTGCCTGCCCGGCCACCGTCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 10

GGTCATCGACGAGATCAAGGCCGCGCTCGAGGCTGCCTGCCCGGCCACCGTCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 43

GGTCATCGACGAGATCAAGGCCGCGCTCGAGGCTGCCTGCCCGGCCACCGTCTCCTGCGCCGACATCCTGGCGCTTGCAGCCCGCGACTCCACCGTCATGgtgactactt ... cattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggaggttgcttttcatggctgccaataacacatacatacaatacattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC
                        caataac  putative branch site (score: 43)
                                         aatacatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggtgtgctaaactaaaattaaacgcgtacatacggtgtagacgatcggaggttgcttttcatggctgccaataacacatacatacaatacattacacagACTGGCGGCCCTGGGTGGATCGTGCCGCTGGGGCGGAGGGACTCCCGTGGCGCTAGCGTGCAGGGCTCCAACAACGACATCCCTGCTCCCAACAACACTC

- -tgtgcta
- - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacaa