1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgggtcacaaatttatacttgccatgttcttttttggaaaccagttaatagaatgtcacgatagttgaatagtgttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG
species | Zea mays |
transcript | GRMZM2G023528_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCEST: gi|6020368|gb|AW065296.1|AW065296
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCEST: gi|71318383|gb|DR795955.1|DR795955
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCEST: gi|5895630|gb|AW036876.1|AW036876
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCEST: gi|33467208|gb|CF244257.1|CF244257
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCEST: gi|74233030|gb|DT640944.1|DT640944
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: GGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCEST: gi|40303169|gb|CK347556.1|CK347556
genomic: GGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
ttttttggaaaccagttaatagaatgtcacgatagttgaatagtgttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG
agttaat putative branch site (score: 62)
ttgctttc putative PPT
ttaatagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgggtcacaaatttatacttgccatgttcttttttggaaaccagttaatagaatgtcacgatagttgaatagtgttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT