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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtaaatgggaaatgtagttgccatagccaaatttttatgacctccgttctctcttttcagttgttgctaattagtcatgtctcctttcctttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 2
--tgtaaatgggaaatgtagttgcca--tagccaaatttttatgacctccgttctctcttttcagttgttgctaattagtcatgtctcctttcctttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
  ||||| |  ||||||   || |||  |  |  ||||    |    || | | | || ||   ||  ||  | || |    | | || |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
cctgtaagttagaaatgctattaccactttccgtaattaaagtattttctgatatttcatt---gtcatttttcat-atctttctatcatttcttttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG

upper sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 3'ss of exon 2
tgtaaatgggaaatgtagttgccatagccaaatttttatgacctccgttctctcttttcagttgttgctaattagtca-tgtctcctttcctttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
       | || || |  ||  ||||  ||   | |||    ||| |   | |||  ||| | |     ||||  | | ||| |  | | | |   |  |||||| ||  |||| |||||||||||||| || |||| |||||| ||||||||||||
-------gtgagattt--ttttcatactca---tcttagcttctcagagatatctgctcattcg--aaaaattcatgagtgtttattgttcatatgtgcagGTGCCACACTTGTGGTCTCTGGTGATGGTCGTTATTACTCAAAGGATGCTGTTCAG

upper sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 2
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 3'ss of exon 3
tgtaaatgggaaatgtagttgccatagccaaatttttatgacctccgttctc-tcttttcagttgttgctaattagtcatgtctcctttcctttct-----tatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
      |  |     ||  |  |||       || || ||| ||   || |  ||| || | | | |   | ||| || | ||    ||  | | |     |  |||    ||  ||||||| ||||||||||||||||||||||| || |||||  |||||
----cttttgtttcatacctcacatgatt--tttgttttgatctaatttattatctgttaaatgggtcagatttactcttttcctagtttatgtttgtgcatgcagGCATGACACTTGTTGTTTCTGGTGATGGCCGCTATTTCTCGAAGGATGCCATTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519862|gb|FL340800.1|FL340800
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211510167|gb|FL335461.1|FL335461
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31353596|gb|CD437953.1|CD437953
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGTTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211114423|gb|FL039504.1|FL039504
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211245824|gb|FL313144.1|FL313144
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211468308|gb|FL243204.1|FL243204
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCANAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211409150|gb|FL322197.1|FL322197
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211520754|gb|FL372662.1|FL372662
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211348782|gb|FL410664.1|FL410664
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211514328|gb|FL308791.1|FL308791
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211320241|gb|FL338456.1|FL338456
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211430936|gb|FL367558.1|FL367558
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211143693|gb|FL324984.1|FL324984
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211113641|gb|FL039501.1|FL039501
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211092187|gb|FL375383.1|FL375383
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149106401|gb|EE292127.2|EE292127
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211515016|gb|FL344872.1|FL344872
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211420086|gb|FL350025.1|FL350025
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211445897|gb|FL403744.1|FL403744
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211137320|gb|FL356389.1|FL356389
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211177446|gb|FL359119.1|FL359119
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211217606|gb|FL408377.1|FL408377
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211012104|gb|FL418130.1|FL418130
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211048105|gb|FL385535.1|FL385535
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|148931122|gb|EC873792.2|EC873792
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211114429|gb|FL039510.1|FL039510
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211220603|gb|FL338340.1|FL338340
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211111130|gb|FL394545.1|FL394545
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211114427|gb|FL039508.1|FL039508
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCAGTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211317021|gb|FL376013.1|FL376013
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211009326|gb|FL418558.1|FL418558
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211260711|gb|FL355112.1|FL355112
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211058754|gb|FL342287.1|FL342287
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211030301|gb|FL309717.1|FL309717
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211030302|gb|FL309718.1|FL309718
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211443060|gb|FL370676.1|FL370676
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31356531|gb|CD440888.1|CD440888
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGTTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211099119|gb|FL353128.1|FL353128
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211491900|gb|FL325739.1|FL325739
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGTTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|213173746|gb|FM188063.1|FM188063
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211445226|gb|FL373040.1|FL373040
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211114426|gb|FL039507.1|FL039507
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211419246|gb|FL320476.1|FL320476
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211383896|gb|FL356595.1|FL356595
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211477070|gb|FL423432.1|FL423432
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGTTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211121113|gb|FL321102.1|FL321102
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211134618|gb|FL369500.1|FL369500
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAACACCCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211200656|gb|FL341863.1|FL341863
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149083128|gb|EE172391.2|EE172391
EST:     GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211477530|gb|FL326610.1|FL326610
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211462418|gb|FL327911.1|FL327911
EST:     GAACTTTGTTCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAG                         GTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctact ... tttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttctctcttttcagttgttgctaattagtcatgtctcctttcctttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
                    tgctaat  putative branch site (score: 2)
                              tcatgtctcctttcct  putative PPT
                                             tttcttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtaaatgggaaatgtagttgccatagccaaatttttatgacctccgttctctcttttcagttgttgctaattagtcatgtctcctttcctttcttatagGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT