1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattactcatgtgcattatagcgggacacggtttgcttgctatatcactagttataggtgtactacccaagtcataatgtggttccatttgttgccttggggtattctgtagatctgggcacacacttactctttccttctatattgatgatatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
species | Zea mays |
transcript | GRMZM2G022793_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|148949951|gb|EC895462.2|EC895462
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|148958042|gb|EC904220.2|EC904220
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|211529569|gb|FL022744.1|FL022744
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|31351537|gb|CD435894.1|CD435894
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: CTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|211234820|gb|FL436043.1|FL436043
genomic: CTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|89252538|gb|DY624324.1|DY624324
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|211529568|gb|FL022743.1|FL022743
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATATEST: gi|30307221|gb|CD001894.1|CD001894
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
EST: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAG ATCATAAAGATTGAGGAGGGAATGACTACAGATAT
genomic: ACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactc ... tatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
ctgtagatctgggcacacacttactctttccttctatattgatgatatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
tatttccc CT-rich tract
tatattgatgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattactcatgtgcattatagcgggacacggtttgcttgctatatcactagttataggtgtactacccaagtcataatgtggttccatttgttgccttggggtattctgtagatctgggcacacacttactctttccttctatattgatgatatttcccagATCATAAAGATTGAGGAGGGAATGACTACAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG