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...aaaaaaaaaagctcggccggtaggggaaagaccacccgtttcagttgcgacaggttctttgttttgcttcttttcctcatttttcctttaaatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGAGATGGCCGGAGTAAAAGCTGAAGATGTCGACCTCGTTCTTCTTTGTAC
species | Zea mays |
transcript | GRMZM2G022563_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAC GAGATGAAACATTGCGGGGACTCTCGATACAEST: gi|71430696|gb|DR811746.1|DR811746
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACA
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|76921158|gb|DV168472.1|DV168472
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCANAGGGCACTTGEST: gi|71446997|gb|DR828047.1|DR828047
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|89756348|gb|DY686398.1|DY686398
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCANAGGGCACTTGEST: gi|71429949|gb|DR810999.1|DR810999
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|76291106|gb|DV030674.1|DV030674
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|149095842|gb|EE181493.2|EE181493
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|149105057|gb|EE290536.2|EE290536
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|78121840|gb|DV540224.1|DV540224
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|148935022|gb|EC879064.2|EC879064
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGEST: gi|101397488|gb|EB820667.1|EB820667
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
genomic: TGAATGGATTGCGGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaatgatgt ... aatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTG
tgcgacaggttctttgttttgcttcttttcctcatttttcctttaaatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGAGATGGCCGGAGTAAAAGCTGAAGATGTCGACCTCGTTCTTCTTTGTAC
ttctttgttttgcttc CT-rich tract
atttttcctttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaaaaagctcggccggtaggggaaagaccacccgtttcagttgcgacaggttctttgttttgcttcttttcctcatttttcctttaaatgtgacagGAGATGAAACATTGCGGGGACTCTCGATACAAGCAGCTCAAAGGGCACTTGAGATGGCCGGAGTAAAAGCTGAAGATGTCGACCTCGTTCTTCTTTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
aaaaaaa
- - - - - - - - - - - - - - -gaccacc
- - - - - - - - - - - - - - - - - - - - -cagttgc