Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatacctttgactaccactccttgttatttcttcaaatctctggctctaatagaaatgtggatggctttagaaattttgtcttctccatctaaaatgctttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG

Basic information

species Zea mays
transcript GRMZM2G022365_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022365_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g42550.1 (Oryza sativa), 3'ss of exon 2
gtagatacc--tttgactaccactccttgttatttcttcaaatct--ctggctctaatagaaatgtggatggctttagaaattttgtcttctccatctaaaatgc-tttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG
|||   ||    |  | | ||     | ||  |  ||| |||| |  || | | || ||||||||  |||| ||  || | | |  ||| ||  |||||| |  |  ||| | ||||||||||| |||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||||||||||||    ||||||||   |||
gtacccactagataaatttccttctttagtgctgccttgaaatttcactaggtttagtagaaatgacgatgactgcagcagtctc-tctgctttatctaagaaacacttggacacagGTGATACTCCAAGGCGCTCTGCTCGCATTAGCGAGAAAGTTAAGGCTTTCGATAGCCCAGAAGGGGAGAAGATCCCGAAACGTTCTAGGAACTCATCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149005216|gb|EE039763.2|EE039763
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023282|gb|FK980089.1|FK980089
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGA
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGA
EST: gi|148944008|gb|EC889091.2|EC889091
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149110044|gb|EE293857.2|EE293857
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211025737|gb|FK980109.1|FK980109
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|5499041|gb|AI854908.1|AI854908
EST:     TGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: TGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|148930862|gb|EC873278.2|EC873278
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|148937746|gb|EC881952.2|EC881952
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|29946862|gb|CB816361.1|CB816361
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398923|gb|FK980068.1|FK980068
EST:     AAAGGCACACCCTGGAGGCCTTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211025738|gb|FK980110.1|FK980110
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAG
EST: gi|211023288|gb|FK980095.1|FK980095
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|148966450|gb|EE017457.2|EE017457
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149000297|gb|EE037453.2|EE037453
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023295|gb|FK980102.1|FK980102
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGA
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGA
EST: gi|211025732|gb|FK980104.1|FK980104
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211020864|gb|FK980086.1|FK980086
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|22473420|gb|BU037900.1|BU037900
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGGTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211025733|gb|FK980105.1|FK980105
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398927|gb|FK980072.1|FK980072
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|13557864|gb|BG549220.1|BG549220
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149090561|gb|EE179871.2|EE179871
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149014904|gb|EE044625.2|EE044625
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149084696|gb|EE174186.2|EE174186
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|71772270|gb|DR970206.1|DR970206
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398918|gb|FK980063.1|FK980063
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|74241419|gb|DT649333.1|DT649333
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211020858|gb|FK980080.1|FK980080
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAG
EST: gi|211025735|gb|FK980107.1|FK980107
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGANGAAAGTCAAGGTTTTT
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGA-GAAAGTCAAGGTTTTT
EST: gi|71307049|gb|DR789680.1|DR789680
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023285|gb|FK980092.1|FK980092
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGSGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|148943632|gb|EC888696.2|EC888696
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398926|gb|FK980071.1|FK980071
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149037734|gb|EE155396.2|EE155396
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398925|gb|FK980070.1|FK980070
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023289|gb|FK980096.1|FK980096
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|21810014|gb|BQ668332.1|BQ668332
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|71318878|gb|DR796197.1|DR796197
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023286|gb|FK980093.1|FK980093
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149014410|gb|EE044011.2|EE044011
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023283|gb|FK980090.1|FK980090
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023290|gb|FK980097.1|FK980097
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|148948808|gb|EC894211.2|EC894211
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023281|gb|FK980088.1|FK980088
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTT
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTT
EST: gi|6031585|gb|AI668487.2|AI668487
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211020853|gb|FK980075.1|FK980075
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211020856|gb|FK980078.1|FK980078
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTYNTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149110922|gb|EE294420.2|EE294420
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|29130386|gb|CB381090.1|CB381090
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|148972841|gb|EE023837.2|EE023837
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|16380034|gb|BI993276.1|BI993276
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|149009406|gb|EE041436.2|EE041436
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398921|gb|FK980066.1|FK980066
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|37416263|gb|CF645782.1|CF645782
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211020852|gb|FK980074.1|FK980074
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211025736|gb|FK980108.1|FK980108
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|31354425|gb|CD438782.1|CD438782
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211023291|gb|FK980098.1|FK980098
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTG-TACCCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTT
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCC-AAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTT
EST: gi|211020865|gb|FK980087.1|FK980087
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|29945183|gb|CB815511.1|CB815511
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|211398917|gb|FK980062.1|FK980062
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG
EST: gi|13557863|gb|BG549219.1|BG549219
EST:     AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGA-CTG                         GTGATACCCCAAGGCGTTCTGCTCGCA--AGCGAGAAAGTCAAGGTTTTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 309

TCGCCAACTGGCGAGGAAATTAAGAACAAGAGGCAACTAAGCCAATACCTAAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 126

TCGCCAACTGGCGAGGAAATTAAGAACAAGAGGCAACTAAGCCAATACCTAAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 114

TCGCCAACTGGCGAGGAAATTAAGAACAAGAGGCAACTAAGCCAATACCTAAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 226

TCGCCAACTGGCGAGGAAATTAAGAACAAGAGGCAACTAAGCCAATACCTAAAGGCACACCCTGGAGGCCCTGCTGCTTCAGATTTTGATTGGGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtggatggctttagaaattttgtcttctccatctaaaatgctttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGCATTAGCGAGAAAGTCAAGGTTTTTGATAGCCCAGAGGGCGAGAAGATCCCGAAACGCAGCAGGAACTCCAGTGG
                                 atctaaa  putative branch site (score: 226)
            tttagaaattttgt  TA-rich tract