1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctaatagcatgccttgcgaatttagtagcatcctgcctatgcattttttccacatgataaatttgaaatgctccaataacattttgtaatttttttatagGTACAAAACTTGATCGAGAAACCACAGCATGATCATTTGCCACTAATTGAGGCTAGCAGGTCTGTGAGCTACCTTTTCAAACTGCTCATAGTTTTCCTAT
species | Zea mays |
transcript | GRMZM2G022090_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ttttccacatgataaatttgaaatgctccaataacattttgtaatttttttatagGTACAAAACTTGATCGAGAAACCACAGCATGATCATTTGCCACTAATTGAGGCTAGCAGGTCTGTGAGCTACCTTTTCAAACTGCTCATAGTTTTCCTAT
caataac putative branch site (score: 2)
tttttttat putative PPT
tccaataacattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatagcatgccttgcgaatttagtagcatcctgcctatgcattttttccacatgataaatttgaaatgctccaataacattttgtaatttttttatagGTACAAAACTTGATCGAGAAACCACAGCATGATCATTTGCCACTAATTGAGGCTAGCAGGTCTGTGAGCTACCTTTTCAAACTGCTCATAGTTTTCCTAT
- - -agcatgc
- - - - - - - - - - - -agtagca
- - - - - - - - - - - - - - - tcctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctcca