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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattaattttctacagacaaaaacttttggtagtgggcacacaaaaaaatgtgggttgtacttgtatctgatcattcacactgggtttattctttcagGATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGAAGGGCAATTTCAGCAG

Basic information

species Zea mays
transcript GRMZM2G021270_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28987485|gb|CB351658.1|CB351658
EST:     ACCTGTATATCAATGAGTGCTAACTGCGACAGACCTGATAATTTCAAAAG                         GATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGA
genomic: ACCTGTATATGAA-GAGTGCTAACTGCGACAGACCTGATAATTTCAAAAGgtttgtatta ... attctttcagGATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGA
EST: gi|32937597|gb|CF042416.1|CF042416
EST:     GACCTGTATATGAAGAGTGCTAACTGCGACAGACCTGATAATTTCAAAAG                         GATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGA
genomic: GACCTGTATATGAAGAGTGCTAACTGCGACAGACCTGATAATTTCAAAAGgtttgtatta ... attctttcagGATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGA
EST: gi|33095886|gb|CF055880.1|CF055880
EST:     GACCTGTATATGAAGAGTGCTAACTGCGACAGACCTGATAATTTCAAAAG                         GATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGA
genomic: GACCTGTATATGAAGAGTGCTAACTGCGACAGACCTGATAATTTCAAAAGgtttgtatta ... attctttcagGATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaatgtgggttgtacttgtatctgatcattcacactgggtttattctttcagGATTTATGAGCAAGTAAATGATCGGTGGGAAGTGTGTGTTAGTCAAAGTGAAGGGCAATTTCAGCAG
                      atctgat  putative branch site (score: 4)
                                          tttattctttc  putative PPT
                                          tttattcttt  TA-rich tract