1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatcggcgacccgtggcgtcgtcatttccctctccgattctcggctcattcattcgctgttttctcaccgggtgtgcctgctcctccggtgtctggcggtgtcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGCGGTGGACACGGTGTTCGACGGCAGCAAGCTGGGGATCGAGCCGCACGC
species | Zea mays |
transcript | GRMZM2G020943_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160636|gb|FL114499.1|FL114499
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|78114597|gb|DV532985.1|DV532985
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|76912974|gb|DV164954.1|DV164954
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211159050|gb|FL114492.1|FL114492
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160632|gb|FL114495.1|FL114495
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGEST: gi|31360064|gb|CD444421.1|CD444421
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|71764659|gb|DR962596.1|DR962596
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160637|gb|FL114500.1|FL114500
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160639|gb|FL114502.1|FL114502
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|149099000|gb|EE185013.2|EE185013
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|148958537|gb|EC904780.2|EC904780
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160642|gb|FL114505.1|FL114505
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160646|gb|FL114509.1|FL114509
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160635|gb|FL114498.1|FL114498
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|78118043|gb|DV536430.1|DV536430
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|89759931|gb|DY688587.1|DY688587
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160643|gb|FL114506.1|FL114506
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCNGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|74241599|gb|DT649513.1|DT649513
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211162232|gb|FL114510.1|FL114510
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|149076865|gb|EE165521.2|EE165521
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160633|gb|FL114496.1|FL114496
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160640|gb|FL114503.1|FL114503
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GCAGTGGCCAAGCAGCTYGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211159051|gb|FL114493.1|FL114493
genomic: GCAGTGGCCAAGCAGCT-GTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160644|gb|FL114507.1|FL114507
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|71325268|gb|DR799321.1|DR799321
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211162233|gb|FL114511.1|FL114511
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGEST: gi|211160638|gb|FL114501.1|FL114501
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
EST: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG CGACGACGGCAGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
genomic: GGCAGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGGgtaatcggcg ... tcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACG
ctgttttctcaccgggtgtgcctgctcctccggtgtctggcggtgtcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGCGGTGGACACGGTGTTCGACGGCAGCAAGCTGGGGATCGAGCCGCACGC
ttctcac putative branch site (score: 17)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcggcgacccgtggcgtcgtcatttccctctccgattctcggctcattcattcgctgttttctcaccgggtgtgcctgctcctccggtgtctggcggtgtcggcggcagCGACGACGGCCGTGACGGGGCGGTCCATGGTGAGGTACGAGGGCGGGTACGCGGTGGACACGGTGTTCGACGGCAGCAAGCTGGGGATCGAGCCGCACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG