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...attgctttgacggagactgcagtatatatagtaacatcacaataatcatattataactataagagtcttatttgagtttctggctcttcatctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCAGAAGACCAGACAATGTTATTGGAGGAGGGTGGTCAAGCAATGGCTGCA
species | Zea mays |
transcript | GRMZM2G020721_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC ---ACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|148986950|gb|EE030765.2|EE030765
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC TAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|71448158|gb|DR829208.1|DR829208
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC TAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|211035508|gb|FL319750.1|FL319750
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCCGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC TAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|211342552|gb|FL342004.1|FL342004
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCCGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC TAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|211541629|gb|FL367734.1|FL367734
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC TAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|91875375|gb|EB405332.1|EB405332
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC ---ACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCEST: gi|211440830|gb|FL365412.1|FL365412
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
EST: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAAC TAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
genomic: GCGTATGCTGAGGTTCTCTTCCATAGGAAGAATACTGCTTCTATTAAAACgtaagtaaat ... tctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGC
tcatattataactataagagtcttatttgagtttctggctcttcatctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCAGAAGACCAGACAATGTTATTGGAGGAGGGTGGTCAAGCAATGGCTGCA
ttataac putative branch site (score: 157)
ctcttcatctttgtc putative PPT
ttataactataaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgctttgacggagactgcagtatatatagtaacatcacaataatcatattataactataagagtcttatttgagtttctggctcttcatctttgtcagTAGACATTCAGATGTCAATCTAGCAGTGATGGATGACAGTTCAGTCAAAGCAGAAGACCAGACAATGTTATTGGAGGAGGGTGGTCAAGCAATGGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- tgctttg
- - - - - - - -actgcag
- - - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctggc