1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttacttcccatatatctataaagtagcaaagttgtcctacatccactcagaaagatattggacctacgttttttttacggtttcatattgctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGGATGGAACTGAG
species | Zea mays |
transcript | GRMZM2G020606_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATG GTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGGEST: gi|37376807|gb|CF624961.1|CF624961
genomic: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATGgtacacttct ... gctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGG
EST: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATG GTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGGEST: gi|211299732|gb|FL213380.1|FL213380
genomic: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATGgtacacttct ... gctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGG
EST: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATG GTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGGEST: gi|28187621|gb|CB179231.1|CB179231
genomic: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATGgtacacttct ... gctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGG
EST: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGTAATG GTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGG
genomic: TGTAAAACTGGCTGTGAAAAATGCAAAGGAAACCATAAAAGCTAGCAATGgtacacttct ... gctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGG
actcagaaagatattggacctacgttttttttacggtttcatattgctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGGATGGAACTGAG
tgctgat putative branch site (score: 80)
tttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacttcccatatatctataaagtagcaaagttgtcctacatccactcagaaagatattggacctacgttttttttacggtttcatattgctgatgcagGTGAGCCTTCAACTTCAGGAAGAGTAGTACGACATGTTTCCTCATTTGTGGATGGAACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - agtagca
- - - - - - - - - - - - - - - - - - - - catccac
- - - - - - - - - - - - - - - - - - - - - - - - - gaaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatat