1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggttatcctctagtactccccaatgcacatgtgcatgtgcacacaaatagccaatgagagtatttggtttatttaattgcgagaaataaacttttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGCAATGAGAAATTGCAATGGTTTTTGGACTCTATCAAGTCATACCCGAATG
species | Zea mays |
transcript | GRMZM2G020446_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAG GTACATCCGTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGCEST: gi|148934359|gb|EC878388.2|EC878388
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAG GTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCEST: gi|211003081|gb|FL282330.1|FL282330
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATC
EST: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCACAG GTACATCCGTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCCGEST: gi|50329919|gb|CO525045.1|CO525045
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCC-G
EST: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAG GTACATCCTTATGTTGCEST: gi|9825116|gb|BE575318.1|BE575318
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGC
EST: TAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAG GTACATCCGTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGCEST: gi|26456264|gb|CA827847.1|CA827847
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAG GTACATCCGCATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGCEST: gi|211452559|gb|FL415488.1|FL415488
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGC
EST: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCACAG GTACATCCGTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGCEST: gi|166441682|gb|EG195243.1|EG195243
genomic: GAAAGAAAGTGCCTGTTTTGCTTCGAATAAATCCAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGC
EST: CAGATGTGGATCCGCAG GTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGC
genomic: CAGATGTGGATCCGCAGgtatggttat ... ttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGC
agccaatgagagtatttggtttatttaattgcgagaaataaacttttttcaacagGTACATCCTTATGTTGCCACGGGAAATAAAACGTCTAAATTTGGGATCCGCAATGAGAAATTGCAATGGTTTTTGGACTCTATCAAGTCATACCCGAATG
atttaat putative branch site (score: 169)
cttttttc putative PPT
tatttggtttatttaa TA-rich tract