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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttcatggcttacgcctccgcgagattgattggttcccaatctgtggatcccggtacgtgctcgacttgtgttaccttaggatctctacctggcacagtaatttttgtgtcttgatgtcatttctagGTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAG

Basic information

species Zea mays
transcript GRMZM2G020002_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082368|gb|EE171552.2|EE171552
EST:     ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCG                         GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG
genomic: ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCGgtgagtgctt ... tcatttctagGTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG
EST: gi|87152398|gb|DY397187.1|DY397187
EST:     ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCG                         GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG
genomic: ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCGgtgagtgctt ... tcatttctagGTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccttaggatctctacctggcacagtaatttttgtgtcttgatgtcatttctagGTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAG
                                     tcttgat  putative branch site (score: 4)
                                             tcatttct  CT-rich tract
                        agtaattttt  TA-rich tract