Sequence
atgc intronic sequence ATGC exonic sequencegtgagcaaggcacctaagattcagtggcttatgaccccgtgacccttcagAGGAAGCGCGCTAGAATCACTGATAAGAAGAAGAAGATCGCTAAGGAGTCTGAGGCTGCCGAGTACCAAAATCTTCTTGCCAGAGGCTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019734_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 5
------------------------------------------------------------------------------------------------------------gtgagcaaggcacctaagattcagtggcttatgac-cccgtgacccttcagAGGAAGCGCGCTAGAATCACTGATAAGAAGAAGAAGATCGCTAAGGAGTCTGAGGCTGCCGAGTACCAAAATCTTCTTGCCAGAGGCTAA
||||||||||| |||||||| ||| | ||| |||| ||| | ||||| ||||||||||| || |||||| |||| |||||||||| ||||||
caccatattatattgtctgcatgtttgtcagttttcaagtcaaaatatatcttccaggtagctttctgcttacctacctaatggtgttgttgtgttgcagGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGC-------------------------------------------------
upper sequence: GRMZM2G019734_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 5
------------------------------------------------------------------------------------------------------gtgagcaaggcacctaagattcagtggcttatgaccccgt-gacccttcagAGGAAGCGCGCTAGAATCACTGATAAGAAGAAGAAGATCGCTAAGGAGTCTGAGGCTGCCGAGTACCAAAATCTTCTTGCCAGAGGCTAA
|| ||||| || |||||||| ||| ||||| ||||||| | ||| |||||||||||| | |||||||| |||| ||||||||||| || ||
gtgagacactgaacttgagaaatagtggtttctgaatcacacttgagaaataatgttttctgaaacttgtttcttctgtttggatttttgacagGCAAGGAAGTTAGCAAAGCCCCTAAGATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAAAATTGC------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgagcaaggcacctaagattcagtggcttatgaccccgtgacccttcagAGGAAGCGCGCTAGAATCACTGATAAGAAGAAGAAGATCGCTAAGGAGTCTGAGGCTGCCGAGTACCAAAATCTTCTTGCCAGAGGCTAA
cccttc CT-rich tract
taagatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcaaggcacctaagattcagtggcttatgaccccgtgacccttcagAGGAAGCGCGCTAGAATCACTGATAAGAAGAAGAAGATCGCTAAGGAGTCTGAGGCTGCCGAGTACCAAAATCTTCTTGCCAGAGGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG