1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaccttcctgacaaccattatggagtctttattgatgctggatttgggttctactgatttctggagcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTGCTGCTTACGGGAACATTCTGCCCCAGAAATTTCTTGATATCCCATCGT
species | Zea mays |
transcript | GRMZM2G019437_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|31360881|gb|CD445238.1|CD445238
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|71420934|gb|DR805240.1|DR805240
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|149076153|gb|EE164742.2|EE164742
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|94479122|gb|EB708080.1|EB708080
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|211394070|gb|FL339831.1|FL339831
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAGCTEST: gi|50332369|gb|CO527495.1|CO527495
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|76289469|gb|DV029037.1|DV029037
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTEST: gi|148952757|gb|EC898739.2|EC898739
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
EST: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAA GAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
genomic: ATCGCGGGTTCCCAGAGGAACTCATCTTCACGCCAGAACGAGCCCGAGAAgtaccttcct ... agcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACT
atggagtctttattgatgctggatttgggttctactgatttctggagcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTGCTGCTTACGGGAACATTCTGCCCCAGAAATTTCTTGATATCCCATCGT
tactgat putative branch site (score: 25)
tttattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttcctgacaaccattatggagtctttattgatgctggatttgggttctactgatttctggagcaatgcagGAGTCGTTCCTGTCGGCCTTGAAGGAAGTGGAACCGGATGTTTGCATAACTGCTGCTTACGGGAACATTCTGCCCCAGAAATTTCTTGATATCCCATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT