1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacgcaaatacctgttttttttaattagtgccttctcctgataatattagcaagcaatgtgggtaaatttgcttctgttttgctgatgatgttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAATCCAAGGTGGACTCGGCGCAGCTTTTCCTTCTCATGCCACCTTCCCTCA
species | Zea mays |
transcript | GRMZM2G019266_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATG GAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAAEST: gi|211216063|gb|FL110628.1|FL110628
genomic: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAA
EST: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATG GAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAGCCAGCAGGCAGGAAEST: gi|211213496|gb|FL110620.1|FL110620
genomic: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAA
EST: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATG GAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAAEST: gi|32826581|gb|CD966259.1|CD966259
genomic: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAA
EST: GATCTAGGCCTCCTACTCCCCAGCATG GAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAGCCAGCAGGCAGGAA
genomic: GATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAA
attagcaagcaatgtgggtaaatttgcttctgttttgctgatgatgttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAATCCAAGGTGGACTCGGCGCAGCTTTTCCTTCTCATGCCACCTTCCCTCA
tgctgat putative branch site (score: 389)
taaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacgcaaatacctgttttttttaattagtgccttctcctgataatattagcaagcaatgtgggtaaatttgcttctgttttgctgatgatgttgctacagGAGGAGCTAGAAACTTTAGAGTAATGAAATCCTTCAACCAGCAGGCAGGAATCCAAGGTGGACTCGGCGCAGCTTTTCCTTCTCATGCCACCTTCCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
-acgcaaa
- - - - - -ctgtttt
- - - - - - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg