1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcgctcttcaactgccatccctctagtctcagaagctatagcgtgttgctcttgctcctcaccctgtgtacccctgcaccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACATACAAGCTGTCCCTAACGAAGTCGACGCTGCAATTGACGTCTGCGAG
species | Zea mays |
transcript | GRMZM2G019260_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|78089475|gb|DV517849.1|DV517849
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|78093392|gb|DV521766.1|DV521766
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|101392374|gb|EB818116.1|EB818116
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|76285163|gb|DV024731.1|DV024731
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|211060651|gb|FL185544.1|FL185544
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAGAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|211063635|gb|FL185550.1|FL185550
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|211060654|gb|FL185547.1|FL185547
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|74234775|gb|DT642689.1|DT642689
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|211060650|gb|FL185543.1|FL185543
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|71447563|gb|DR828613.1|DR828613
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|148978577|gb|EE026218.2|EE026218
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|211060652|gb|FL185545.1|FL185545
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACASSCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|91867695|gb|EB399758.1|EB399758
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|76017987|gb|DT945157.1|DT945157
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|101390541|gb|EB817205.1|EB817205
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCCTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACAEST: gi|71308540|gb|DR790509.1|DR790509
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
EST: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGG GCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
genomic: CCGTCGTCCGCCCCCTCCGCGACAGCCTCCCCGCCGACGCTTGGGCCTGGgtgagcgctc ... ccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACA
agctatagcgtgttgctcttgctcctcaccctgtgtacccctgcaccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACATACAAGCTGTCCCTAACGAAGTCGACGCTGCAATTGACGTCTGCGAG
tcctcac putative branch site (score: 124)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgctcttcaactgccatccctctagtctcagaagctatagcgtgttgctcttgctcctcaccctgtgtacccctgcaccgatgctagGCGTGGACGGATGTCAAAGTGACTTCCCCTCAGCTCTCACGGGAGGCCACATACAAGCTGTCCCTAACGAAGTCGACGCTGCAATTGACGTCTGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG