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...ggtgttctaggggacagtccgataaaatgcgcttgctgaagtcactgtagcacttatgttatagtctaatgtttccttcctctatcactatacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTA
species | Zea mays |
transcript | GRMZM2G018697_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAG GTCCCTTTCTGCCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAGEST: gi|9733421|gb|BE512278.1|BE512278
genomic: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgt ... tacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAG
EST: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAG GTCCCTTTCTGCCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAGEST: gi|211207933|gb|FK975839.1|FK975839
genomic: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgt ... tacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAG
EST: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAG GTCCCTTTCTGCCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAG
genomic: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgt ... tacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAG
tgtagcacttatgttatagtctaatgtttccttcctctatcactatacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTA
gtctaat putative branch site (score: 158)
ttatgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgttctaggggacagtccgataaaatgcgcttgctgaagtcactgtagcacttatgttatagtctaatgtttccttcctctatcactatacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - ctgtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt