1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttgatatctagtgcttttctttgatctcacatgttctctgtggaggtggatttggactacctggctgataagataattatgtctcgataactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACCTACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCT
species | Zea mays |
transcript | GRMZM2G018447_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|32868298|gb|CF007980.1|CF007980
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424414|gb|FL084949.1|FL084949
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424415|gb|FL084950.1|FL084950
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|76018971|gb|DT946141.1|DT946141
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424413|gb|FL084948.1|FL084948
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|32869440|gb|CF009122.1|CF009122
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424416|gb|FL084951.1|FL084951
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421813|gb|FL084940.1|FL084940
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|32856121|gb|CD995802.1|CD995802
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421814|gb|FL084941.1|FL084941
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|89756005|gb|DY686208.1|DY686208
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421803|gb|FL084930.1|FL084930
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|67016859|gb|CO445608.1|CO445608
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGTCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|89246821|gb|DY618608.1|DY618608
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424417|gb|FL084952.1|FL084952
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421809|gb|FL084936.1|FL084936
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|76288121|gb|DV027689.1|DV027689
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|60394784|gb|DN227654.1|DN227654
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|32935782|gb|CF040594.1|CF040594
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421810|gb|FL084937.1|FL084937
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|76018970|gb|DT946140.1|DT946140
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|18172273|gb|BM347661.1|BM347661
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424418|gb|FL084953.1|FL084953
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|116821688|gb|EC865015.1|EC865015
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|29947193|gb|CB816528.1|CB816528
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421805|gb|FL084932.1|FL084932
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTATAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421806|gb|FL084933.1|FL084933
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421802|gb|FL084929.1|FL084929
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211424411|gb|FL084946.1|FL084946
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|211421808|gb|FL084935.1|FL084935
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACEST: gi|18169036|gb|BM338876.1|BM338876
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
EST: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAG GTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
genomic: CTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTACAAAGgtgccgcctt ... aactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGAC
aggtggatttggactacctggctgataagataattatgtctcgataactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACCTACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCT
cgataac putative branch site (score: 145)
tgataagataattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgatatctagtgcttttctttgatctcacatgttctctgtggaggtggatttggactacctggctgataagataattatgtctcgataactgaccagGTGGGTAATTGAGGTCACTGGAGCGGCGGGCACCCTTTACGCCGGCGAGACCTACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG