Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtccaggctgctgtctctacaaaatctgattagagtttgtctgtacactttgaccccagtgctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA

Basic information

species Zea mays
transcript GRMZM2G018228_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018228_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------------------------------------------------------------gttagtccaggctgctgtctctacaaaatctgattagagtttgtctgtacactttgaccccagtgctaactg--tgcctct-ttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA
                                                                            |      |  | ||||| | | | |     | |||    | | | ||    | |      ||  |||  |  ||   || || | | ||| ||||||| |||||||| || || || |||||||| |||||||||||||| || ||  |  | ||||||||||| ||||||||||| || ||||| |||||||
gttcgctcttcttataaactttctagttacagtggccttatgaattataagatcaagatttggaaatgtttttgaatcactttgcatactgtcccgaaacatcaatagtagtagctttgtttaatgctcgctaatggtattaatggattgaagctattaaattgtgcagTTTGGTTACATCGTGCTGACTACATCTGCTGGCATTATGGACCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGCAAGGTTCTCGGCTTCTTCTATTGAA

upper sequence: GRMZM2G018228_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------gttagtccaggctgctgtctctacaaaatctgattagagttt-----gtctgtacactttg--accccagtgctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA
               ||  |  |   |  |   |||   | | |   | |  ||||     || ||  || | ||  |        | || | ||  |     | ||  | ||||||| ||||| ||||| ||||| || |||||||| ||||||||||| |||||  |    || |||||||| ||||| || || ||||| || || |   
gtaaaaaactaaccattcttttat-ttaataaatctctgagaccaattcatggtttattgtgtttgatcattgtgggatattctaacaaagtatgtgtaccaaattga-gcagTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAAGAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTAG-

upper sequence: GRMZM2G018228_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT5G59850.1 (Arabidopsis thaliana), 3'ss of exon 3
gttagtccaggctgctgtctctacaaaatctgattagagtttgtct--gtacactttgac-cccagtg--ctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA
||  |||     |      | | || | | || ||   |||| |    |  || | | |    |||||  || ||  ||  |  || | | ||| ||||||| ||||| || || || || || ||||| ||||||||||| || || ||| |  | ||||||||||||||||||||||| || |||||||| ||||
gtctgtctt--ttaagtcttgttcatattttggttctggttttttaaagagcaatcttatattcagtgatcttacattgagttcttaaattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAATGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGAA

upper sequence: GRMZM2G018228_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
---gttagtc-caggctgctgtctct---acaaaatctgattaga-gtttgtctgtacactttgaccccagtgctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA
    ||||   ||  ||  ||| |      | | || |  || |       | | |    ||| |    |   |      ||    |   |    || ||||||| ||||| || || || ||||| ||||| || ||||| |||||||||||  |  | ||||||||||||||||| || || |||||||| || |   
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG

upper sequence: GRMZM2G018228_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S115_101V6.1 (Physcomitrella patens), 3'ss of exon 2
------------gttagtccaggctgctgtctctacaaaatctgattagagtttgtctgtacactttgaccccagtgctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA
              ||||   ||    |   |    |  ||    || || | |    |||   ||||   ||| | ||     |||   |||      |||||||||| ||||| ||  | ||||| |||||||||||||||||||| || |||||| |  | ||||| || || || |||||||| ||||||||||| ||| 
acttaagttgacagtagtgtggggaatttcgtagtgagtattgcctttgactcttagggta---tttggttcca-ttctgctgatgctcgtttcttgtttgtagTTTGGATACATTGTTTTGACAACATCTGCTGGAATTATGGACCACGACGAGGCCAGGAGAAAGAACGTAGGAGGAAAGGTTCTTGGTTTCTTTTACTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589998|gb|BI674614.1|BI674614
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAGCAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|148930398|gb|EE284865.2|EE284865
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|28422588|gb|CB251939.1|CB251939
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|15427199|gb|BI543021.1|BI543021
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|91872821|gb|EB402778.1|EB402778
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGGTACATCGTCCTAACAACTTTTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|78087196|gb|DV515589.1|DV515589
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTA
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTA
EST: gi|15352981|gb|BI502592.1|BI502592
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|6342770|gb|AW165594.1|AW165594
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|28983576|gb|BQ538659.2|BQ538659
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|60344390|gb|DN211363.1|DN211363
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|18385315|gb|BM418514.1|BM418514
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGNCCTAACAACTTCTGCTGGAATTATGGACCATGA
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGA
EST: gi|60345117|gb|DN212090.1|DN212090
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|37377977|gb|CF625637.1|CF625637
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|6654220|gb|AW267625.1|AW267625
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|5650172|gb|AI920532.1|AI920532
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|31405657|gb|CD484389.1|CD484389
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|26557592|gb|CA829827.1|CA829827
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|60400165|gb|DN232972.1|DN232972
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|211133243|gb|FL429642.1|FL429642
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCAT
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCAT
EST: gi|8665827|gb|BE186643.1|BE186643
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|8103296|gb|AW927943.1|AW927943
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|60353783|gb|DN220756.1|DN220756
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|9566498|gb|BE476007.1|BE476007
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|37396552|gb|CF635568.1|CF635568
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|91872822|gb|EB402779.1|EB402779
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|28361708|gb|CB240064.1|CB240064
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|31405658|gb|CD484390.1|CD484390
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|5713655|gb|AI943647.1|AI943647
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|9953543|gb|BE640126.1|BE640126
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|211099246|gb|FL471142.1|FL471142
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|211313730|gb|FL422318.1|FL422318
EST:     GTGTTAAGGAGATSGAGGGATGGASGGCGAGGCTTCTTCCATCTCGCSAG                         TTTGGCTACATCGTSCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|6695513|gb|AW288621.1|AW288621
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCCAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|60401175|gb|DN233982.1|DN233982
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|60351394|gb|DN218367.1|DN218367
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|87298780|gb|DY470783.1|DY470783
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGA
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGA
EST: gi|7844412|gb|AW787634.1|AW787634
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|9953480|gb|BE640063.1|BE640063
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACC
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACC
EST: gi|60400287|gb|DN233094.1|DN233094
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|4647015|gb|AI622090.1|AI622090
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|4826200|gb|AI667828.1|AI667828
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|78087195|gb|DV515588.1|DV515588
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|60350108|gb|DN217081.1|DN217081
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|93013414|gb|EB638934.1|EB638934
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|9733824|gb|BE512576.1|BE512576
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|21809929|gb|BQ668247.1|BQ668247
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|113704258|gb|EE681762.1|EE681762
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|166706204|gb|EG238895.1|EG238895
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGG
EST: gi|60400276|gb|DN233083.1|DN233083
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|7844411|gb|AW787633.1|AW787633
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|9731482|gb|BE510234.1|BE510234
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|211104196|gb|FL471171.1|FL471171
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|21809928|gb|BQ668246.1|BQ668246
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACGACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
EST: gi|14883606|gb|BI273443.1|BI273443
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATC
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATC
EST: gi|15199107|gb|BI423660.1|BI423660
EST:     GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAG                         TTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG
genomic: GTGTTAAGGAGATCGAGGGATGGACGGCGAGGCTTCTTCCATCTCGCCAGgttagtccag ... actggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtccaggctgctgtctctacaaaatctgattagagtttgtctgtacactttgaccccagtgctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG