1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagccctcctcaaccttatgcccatttgaattgcttcattctgaggatacgcccctgattattattgttctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG
species | Zea mays |
transcript | GRMZM2G018228_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG GCTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGEST: gi|28983576|gb|BQ538659.2|BQ538659
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG GTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGEST: gi|31405657|gb|CD484389.1|CD484389
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG GTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGEST: gi|211189028|gb|FL363949.1|FL363949
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG GCTAMATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
atttgaattgcttcattctgaggatacgcccctgattattattgttctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG
ccctgat putative branch site (score: 4)
ttgttct putative PPT
tgattattattgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccctcctcaaccttatgcccatttgaattgcttcattctgaggatacgcccctgattattattgttctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA