1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcccattcctctattatctggggattttcgtttttccttgtggatgacaattggtcttttctttttacatttgtggtcatgatctcatattgacttgcagGCTACCAAGAAGATTGCTGATGCAAAGCTAGCTAAAGATTTCCAAGCAGTCCTAAAAGAATTCCAGAAAGCCCAACGATTAGCAGCAGAGAGAGAAGCTG
species | Zea mays |
transcript | GRMZM2G017329_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGAGGCAGATCATCGCGTTGAAGTCAGC GCTACCAAGAAGATTGCTGATGCAAAGCTAGCTAAAGATTTCCAAGCAGTCEST: gi|211157709|gb|FL243881.1|FL243881
genomic: GCGAGGCGGATCATCGCGTTGAAGTCAGCgtatgtgcct ... tgacttgcagGCTACCAAGAAGATTGCTGATGCAAAGCTAGCTAAAGATTTCCAAGCAGTC
EST: CAGACAAGCTTAAACAAGCCAGCGAGGCAGATCATCGCGTTGAAGTCAGC GCTACCAAGAAGATTGCTGATGCAAAGCTRGCTAAAGATTTCCAAGCAGTC
genomic: CAGACAAGCTTAAACAAGCCAGCGAGGCGGATCATCGCGTTGAAGTCAGCgtatgtgcct ... tgacttgcagGCTACCAAGAAGATTGCTGATGCAAAGCTAGCTAAAGATTTCCAAGCAGTC
gacaattggtcttttctttttacatttgtggtcatgatctcatattgacttgcagGCTACCAAGAAGATTGCTGATGCAAAGCTAGCTAAAGATTTCCAAGCAGTCCTAAAAGAATTCCAGAAAGCCCAACGATTAGCAGCAGAGAGAGAAGCTG
tattgac putative branch site (score: 398)
ttttctttttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccattcctctattatctggggattttcgtttttccttgtggatgacaattggtcttttctttttacatttgtggtcatgatctcatattgacttgcagGCTACCAAGAAGATTGCTGATGCAAAGCTAGCTAAAGATTTCCAAGCAGTCCTAAAAGAATTCCAGAAAGCCCAACGATTAGCAGCAGAGAGAGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- ccattcc
- - - - - - - - - - - - - - - - - - - -gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatc