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gtatggtgatggtttgtgattttttctttcatgtggggtgtggtcctttgagcttaagatttttccttaaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG
species | Zea mays |
transcript | GRMZM2G017254_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCAGAAGGGATGCCACGGGGAGTCATTACAATGGAGATTCTAGCATTG GGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCTEST: gi|22490953|gb|BU050876.1|BU050876
genomic: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTGgtatggtgat ... aaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCT
EST: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTG GGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCTEST: gi|60350389|gb|DN217362.1|DN217362
genomic: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTGgtatggtgat ... aaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCT
EST: TACAATGGAGATTCTAGCATTNG GGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCEST: gi|7227420|gb|AW566061.1|AW566061
genomic: TACAATGGAGATTCTAGCATT-Ggtatggtgat ... aaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGC
EST: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTG GGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCTEST: gi|19057472|gb|BM736124.1|BM736124
genomic: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTGgtatggtgat ... aaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCT
EST: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTG GGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCT
genomic: AAGCAGAAGGGATGCCACTGCCAGTCACTACAATGGAGATTCTAGCATTGgtatggtgat ... aaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCT
ttctttcatgtggggtgtggtcctttgagcttaagatttttccttaaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG
tttttcctta CT-rich tract
ttaagatttttcctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgatggtttgtgattttttctttcatgtggggtgtggtcctttgagcttaagatttttccttaaaatttcagGGGCTTCATTGCACAACCTCACTGATGCGTATCATGGAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA