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gtaaactattttgttagtgcttatagattcatttgtccattgggcatgcatacattgtaataactggatgacgtgtttgctgtgcaataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
species | Zea mays |
transcript | GRMZM2G017086_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211512097|gb|FL429023.1|FL429023
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211493528|gb|FL393023.1|FL393023
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGAEST: gi|211043164|gb|FL426037.1|FL426037
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGA
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211020022|gb|FL404266.1|FL404266
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211140278|gb|FL369584.1|FL369584
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211542655|gb|FL412583.1|FL412583
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|241994792|gb|GR421145.1|GR421145
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211144966|gb|FL424885.1|FL424885
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|78121540|gb|DV539924.1|DV539924
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211168209|gb|FL421347.1|FL421347
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211449542|gb|FL376102.1|FL376102
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211504148|gb|FL387155.1|FL387155
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211408393|gb|FL407128.1|FL407128
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211066798|gb|FL430461.1|FL430461
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211133807|gb|FL389465.1|FL389465
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCMGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211513751|gb|FL391725.1|FL391725
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211321831|gb|FL416221.1|FL416221
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211059996|gb|FL387688.1|FL387688
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211455945|gb|FL376150.1|FL376150
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211099805|gb|FL386855.1|FL386855
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211008625|gb|FL395313.1|FL395313
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211106564|gb|FL394472.1|FL394472
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|32935100|gb|CF039912.1|CF039912
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211037648|gb|FL421296.1|FL421296
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211219147|gb|FL370888.1|FL370888
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211141642|gb|FL394943.1|FL394943
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211085323|gb|FL409653.1|FL409653
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211254374|gb|FL402662.1|FL402662
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAAATTATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTTGAAAGATEST: gi|74240015|gb|DT647929.1|DT647929
genomic: GTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAA-T-ATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGT-GAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211431557|gb|FL401073.1|FL401073
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211141962|gb|FL418179.1|FL418179
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|13237239|gb|BG355253.1|BG355253
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|67017287|gb|CO446036.1|CO446036
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211536230|gb|FL396283.1|FL396283
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211527639|gb|FL412989.1|FL412989
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|33094903|gb|CF054897.1|CF054897
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211335073|gb|FL428116.1|FL428116
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|31998167|gb|CD661962.1|CD661962
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211459123|gb|FL410721.1|FL410721
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211379399|gb|FL389227.1|FL389227
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211076695|gb|FL396856.1|FL396856
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211036892|gb|FL381576.1|FL381576
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: TGTGCCACCTGNAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211121494|gb|FL373631.1|FL373631
genomic: TGTGCCACCTG-AACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|50332356|gb|CO527482.1|CO527482
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|211521051|gb|FL387963.1|FL387963
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
tgggcatgcatacattgtaataactggatgacgtgtttgctgtgcaataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
taataac putative branch site (score: 1)
atacattgtaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactattttgttagtgcttatagattcatttgtccattgggcatgcatacattgtaataactggatgacgtgtttgctgtgcaataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT