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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagtctagaattttctgcttacaccttgcactgcactgagtaaattacaagtaacaaaaaacattggtcctttatatctactaattcgtttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG

Basic information

species Zea mays
transcript GRMZM2G016817_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016817_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g34640.1 (Oryza sativa), 3'ss of exon 2
taagtctagaatt-ttctgcttacaccttgcactgcactgagtaaattacaagtaacaaa-aaacattggtcctttatatctactaattcgttttttt---acagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG
    |||    || |  ||| || |   |||  |||  |  | | |  ||||||         ||||   || | | | ||||||||||| |||  ||   ||||||||||| ||||||||||||||||| ||||| || |||||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||
--tttctttctttgtcttgcgtagattctgc-ttgccttttgcata--acaagtgctgcccggacataactcttatgtgtctactaattcctttcattcgaacagAAAAGGAGAACTTGTGCCTTTATGGGTACCCTAATGAAACATGGGAAGTTACCTTGCCTGCTGAGGAAGTTCCTCCGGAGATCCCTGAACCAGCTTTAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211450061|gb|FL055705.1|FL055705
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447942|gb|FL055689.1|FL055689
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|18963781|gb|BM660626.1|BM660626
EST:     ATG-GGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGGAAAAC-TGTGCCTTTATGGCTACCCCAACGAAACATGGGAGGTA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAA-GGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTA
EST: gi|211445815|gb|FL055672.1|FL055672
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|33090954|gb|CF050948.1|CF050948
EST:     ATGTGGAGAAGCTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447949|gb|FL055696.1|FL055696
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450062|gb|FL055706.1|FL055706
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|69351460|gb|DR452142.1|DR452142
EST:     ATGTGGAGAAGTTCTACCAGCTGCGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450058|gb|FL055702.1|FL055702
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450064|gb|FL055708.1|FL055708
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|32838714|gb|CD978395.1|CD978395
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443698|gb|FL055660.1|FL055660
EST:     CTCACCAACGATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: CTCACCAACGATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445824|gb|FL055681.1|FL055681
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450059|gb|FL055703.1|FL055703
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|20301069|gb|BQ164012.1|BQ164012
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAGGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447945|gb|FL055692.1|FL055692
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443706|gb|FL055668.1|FL055668
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447948|gb|FL055695.1|FL055695
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445820|gb|FL055677.1|FL055677
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTTA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGT-A
EST: gi|211447943|gb|FL055690.1|FL055690
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445822|gb|FL055679.1|FL055679
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGA-CCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTA
EST: gi|211443701|gb|FL055663.1|FL055663
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|20300963|gb|BQ163906.1|BQ163906
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAGGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|32838581|gb|CD978259.1|CD978259
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445814|gb|FL055671.1|FL055671
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443695|gb|FL055657.1|FL055657
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447946|gb|FL055693.1|FL055693
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447937|gb|FL055684.1|FL055684
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGCAAACATGGGAAGTA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACG-AAACATGGGAAGTA
EST: gi|67015263|gb|CO444012.1|CO444012
EST:     GTGGNAGAATTTCTACCAGCTGTGCGACCCTG                         -AAAGG-AAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: GTGG-AGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445823|gb|FL055680.1|FL055680
EST:     ATGTNGGAGAAGTTCTACCAGCTGTGCCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTA
genomic: ATGT-GGAGAAGTTCTACCAGCTGTG-CGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTA
EST: gi|211445813|gb|FL055670.1|FL055670
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447938|gb|FL055685.1|FL055685
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443705|gb|FL055667.1|FL055667
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450060|gb|FL055704.1|FL055704
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|20301050|gb|BQ163993.1|BQ163993
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAGGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443697|gb|FL055659.1|FL055659
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447941|gb|FL055688.1|FL055688
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447944|gb|FL055691.1|FL055691
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450063|gb|FL055707.1|FL055707
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447947|gb|FL055694.1|FL055694
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445825|gb|FL055682.1|FL055682
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTWA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443696|gb|FL055658.1|FL055658
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445826|gb|FL055683.1|FL055683
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445812|gb|FL055669.1|FL055669
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447951|gb|FL055698.1|FL055698
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445817|gb|FL055674.1|FL055674
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450057|gb|FL055701.1|FL055701
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211445821|gb|FL055678.1|FL055678
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|20301051|gb|BQ163994.1|BQ163994
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAGGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|20301070|gb|BQ164013.1|BQ164013
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAGGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443700|gb|FL055662.1|FL055662
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211443703|gb|FL055665.1|FL055665
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211447950|gb|FL055697.1|FL055697
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|32837497|gb|CD977175.1|CD977175
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
EST: gi|211450056|gb|FL055700.1|FL055700
EST:     ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG                         AAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA
genomic: ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 381

ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG


Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 162

ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG


Block sizes: 43 (upstream exon), 48 (downstream exon)
Score: 157

ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG


Block sizes: 33 (upstream exon), 48 (downstream exon)
Score: 167

ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGgtgagtctgc ... ttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaagtaacaaaaaacattggtcctttatatctactaattcgtttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG
                                  tactaat  putative branch site (score: 167)
                                        ttcgttttttt  CT-rich tract
                          tttatatctactaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
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taagtctagaattttctgcttacaccttgcactgcactgagtaaattacaagtaacaaaaaacattggtcctttatatctactaattcgtttttttacagAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - tgcttac
- - - - - - - - - - - - -cttgcac
- - - - - - - - - - - - - -tgcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa