1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgtttctgcagaagaaatgctgtgtgttgctattgaaagaaggatttaggtgattttcttttgcaaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCACCTCTGATGCCGTTGTTGTTGACGCCAAGGTGGCTGAGCAAGCACCAT
species | Zea mays |
transcript | GRMZM2G015989_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|9254561|gb|BE345029.1|BE345029
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCCCCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|32935512|gb|CF040324.1|CF040324
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGGGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|32847822|gb|CD987503.1|CD987503
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|33096671|gb|CF056665.1|CF056665
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|211490744|gb|FL282860.1|FL282860
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|9952879|gb|BE639462.1|BE639462
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCCCCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|166582092|gb|EG125898.1|EG125898
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAAACCTTCATEST: gi|4573038|gb|AI586687.1|AI586687
genomic: CATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAA-CCTTCAT
EST: CTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCEST: gi|9952880|gb|BE639463.1|BE639463
genomic: CTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
EST: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAG GTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATT
genomic: CAGGGGAGTATGAGGACTTGATGGCTGCTGGTATCATTGATCCCACCAAGgtgtgtttct ... caaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATC
gctgtgtgttgctattgaaagaaggatttaggtgattttcttttgcaaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCACCTCTGATGCCGTTGTTGTTGACGCCAAGGTGGCTGAGCAAGCACCAT
ttttcttttgc CT-rich tract
attttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttctgcagaagaaatgctgtgtgttgctattgaaagaaggatttaggtgattttcttttgcaaaaaacagGTTGTGAGGTGCTGCTTGGAGCATGCTGCATCGGTGGCGAAAACCTTCATCACCTCTGATGCCGTTGTTGTTGACGCCAAGGTGGCTGAGCAAGCACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG