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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA

Basic information

species Zea mays
transcript GRMZM2G015989_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015989_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 3'ss of exon 2
gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA
||||||| |   |||  |  |||||  |   |  |  | |  ||         | || |  |  | || ||||            ||||   ||| ||||| |||||||| ||||| |||||||| |||||||| || || || ||||| ||||| || || ||||| ||||| || ||||||||||| ||||||||||||||||
gtgagttgt---acattctaataatttctactagc--atgatgctatcatctataacatcaacttctgagttgtg----------acttctattttctatgacagAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCA

upper sequence: GRMZM2G015989_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G18760.2 (Glycine max), 3'ss of exon 1
gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgt--cagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA
                  |||  ||||| ||   |    || |   ||  |  |  ||   | | | |  |||    |  || ||   |  |||||   | |  ||||  || || |||||||| || ||||| || ||||| || ||||| || |||||  ||||||| || ||||| |||||||||||||| || ||||| || |
----------------gtataatataacactcctcgctcgctgtgactagtgattgcgaa-acgcgcgttttgagtgtcgtttttgagtttttttcgcgttttgcagAGCGGTGTGAACAAGCTCGCGGATCTGGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTA

upper sequence: GRMZM2G015989_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA
|| ||| |  |    || | |   ||| |   ||  ||   |    |    ||  |  |  | || | | ||     |  ||  || ||  || |  | |   ||  ||| ||||||||||| |||||||| || || ||||| |||||||| || || |||||||| || || || ||||||||||| |||||   |||||| |
gtaagtatcttttttaaaaaaagttaatg---ga--aacttcattcccaaaccggagctaaaggtttacattttctgtggtttctaatt--ttgtgttgtactagGCTGGTGTCAACAAGCTCGCAGATCTTGTTGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTTCTTGAGAGCAAGTATGGATCACCACGAATTGTTA

upper sequence: GRMZM2G015989_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttt---tctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttatta------------cttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA
||||||||   | | | | || | | || |   |   || |       | || | |  | ||   ||  |   |     |||  | |||             || | |||||| | ||||| ||| || || || ||||| ||||| || || ||||||||||| ||||| ||  | ||||| ||||| || |||||||||||||| || |||||||| |
gtgagtttgtgtgtaaaacacttttgatcaatatgttctgaacattttgttgattcctatgtattagactttctgatcattatctcttaagtcctaacatctttcaatttcctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAAGGCAGGAATGTTGTCCTAGAGAGCAAGTATGGCTCCCCAAAAATTGTTA

upper sequence: GRMZM2G015989_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA
||||||||         ||  | |||||   | | |  |    |   |     | | ||    |||||  ||     ||  |  |  ||     | | || |||||  || || || |||||||| ||||| || |||||||||||||| ||||| ||| | ||||| || || || ||||||||||| || || |||||||| |
gtgagttt--------gcaactgataacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgttt---ccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211451228|gb|FL117916.1|FL117916
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|26558835|gb|CA831070.1|CA831070
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211446984|gb|FL117892.1|FL117892
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|22473201|gb|BU037681.1|BU037681
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32841380|gb|CD981061.1|CD981061
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AANTGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAA
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAA-TGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAA
EST: gi|211451233|gb|FL117921.1|FL117921
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451231|gb|FL117919.1|FL117919
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449111|gb|FL117908.1|FL117908
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455494|gb|FL117940.1|FL117940
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCCGGGGTTACTCTTGGACCAAA
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTC-GGGGTTACTCTTGGACCAAA
EST: gi|32840179|gb|CD979860.1|CD979860
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATTGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAA
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAA-TGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAA
EST: gi|211453373|gb|FL117934.1|FL117934
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453377|gb|FL117938.1|FL117938
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455500|gb|FL117946.1|FL117946
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451230|gb|FL117918.1|FL117918
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453374|gb|FL117935.1|FL117935
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451222|gb|FL117910.1|FL117910
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|86472526|gb|DY238896.1|DY238896
EST:     CAAAGGAGCTGCTTTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|29167881|gb|CB411141.1|CB411141
EST:     TTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: TTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840151|gb|CD979832.1|CD979832
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATTGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAA
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAA-TGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAA
EST: gi|211449106|gb|FL117903.1|FL117903
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840279|gb|CD979960.1|CD979960
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455506|gb|FL117952.1|FL117952
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449098|gb|FL117895.1|FL117895
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|28568974|gb|CB280849.1|CB280849
EST:     ATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: ATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840608|gb|CD980289.1|CD980289
EST:     CAAAGGAGCTGCATTTCAACAAGGACGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCCTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|6636936|gb|AW261208.1|AW261208
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGNCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455508|gb|FL117954.1|FL117954
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|67040018|gb|CO466273.1|CO466273
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453370|gb|FL117931.1|FL117931
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTTCGTCGGGGTTACTCTTGGACCAAA
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCT-CGTCGGGGTTACTCTTGGACCAAA
EST: gi|211451229|gb|FL117917.1|FL117917
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840617|gb|CD980298.1|CD980298
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGGCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455501|gb|FL117947.1|FL117947
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455503|gb|FL117949.1|FL117949
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451236|gb|FL117924.1|FL117924
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|31355200|gb|CD439557.1|CD439557
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453372|gb|FL117933.1|FL117933
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455498|gb|FL117944.1|FL117944
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449107|gb|FL117904.1|FL117904
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211446982|gb|FL117890.1|FL117890
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455504|gb|FL117950.1|FL117950
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453368|gb|FL117929.1|FL117929
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211446986|gb|FL117894.1|FL117894
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|67016492|gb|CO445241.1|CO445241
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455496|gb|FL117942.1|FL117942
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|47961558|gb|CN844267.1|CN844267
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451224|gb|FL117912.1|FL117912
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451227|gb|FL117915.1|FL117915
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840620|gb|CD980301.1|CD980301
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453378|gb|FL117939.1|FL117939
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449102|gb|FL117899.1|FL117899
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455502|gb|FL117948.1|FL117948
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32934116|gb|CF038928.1|CF038928
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840152|gb|CD979833.1|CD979833
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455497|gb|FL117943.1|FL117943
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211455505|gb|FL117951.1|FL117951
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453366|gb|FL117927.1|FL117927
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449101|gb|FL117898.1|FL117898
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840586|gb|CD980267.1|CD980267
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449108|gb|FL117905.1|FL117905
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|32840180|gb|CD979861.1|CD979861
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211449112|gb|FL117909.1|FL117909
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211451235|gb|FL117923.1|FL117923
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211001976|gb|FL117955.1|FL117955
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAAGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453371|gb|FL117932.1|FL117932
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453369|gb|FL117930.1|FL117930
EST:     CANAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATTCTCGTCGGGGTTACTCTTGGACCAAA
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGAT-CTCGTCGGGGTTACTCTTGGACCAAA
EST: gi|211453376|gb|FL117937.1|FL117937
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|87155572|gb|DY400361.1|DY400361
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
EST: gi|211453364|gb|FL117925.1|FL117925
EST:     CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAA                         AATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG
genomic: CAAAGGAGCTGCATTTCAACAAGGATGGCTCGGCTATCAGGAAAATGCAAgtgagttttc ... cctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA
                                         ttttcctat  CT-rich tract
                              ttattacttgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG