Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgctgcacttgtatatgcatgtcgtttcatctaatactgacacgagtacgtgttggcttaacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG

Basic information

species Zea mays
transcript GRMZM2G015902_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015902_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g25720.1 (Oryza sativa), 3'ss of exon 2
---------------------------------gtactgtgctgcacttgtatatgcatgtcgtttc--atctaatactga---cacgagtacgtgttggcttaa--cctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG
                                   | | || ||   |  |  ||   ||  | | |  |  | |  | ||    | | |   | || ||  | |    |||||| ||||||| ||||||| |||||||  |||||||||||| |||| ||||||||||    ||||||| ||||  ||||| || || |||||||| || |||
gtgcgtttttaacttcgcgtgtgattgttcttgccaatctgttgttttcattcatctttgatgatgcggaattgaagcggagcgtatgtgcgtgcgtgggtctgatgtttgaagGCTGAGGTATGTGGAGAACGAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAGGTCGATGAGCTCTACACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048276|gb|EB158694.1|EB158694
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211469328|gb|FL299247.1|FL299247
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|76935876|gb|DV174501.1|DV174501
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|149014683|gb|EE044352.2|EE044352
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211001836|gb|FL114782.1|FL114782
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211471845|gb|FL299252.1|FL299252
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211471857|gb|FL299264.1|FL299264
EST:     -AGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAG
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAG
EST: gi|211469319|gb|FL299238.1|FL299238
EST:     AGGACACCTTCGCTCAGGAGACCGCCGTCACTTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGA
genomic: AGGACACCTTCGCTCAGGAGACCGCCGTCACT-ATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGA
EST: gi|211471854|gb|FL299261.1|FL299261
EST:     CARGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGA
EST: gi|211001838|gb|FL114784.1|FL114784
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|71332986|gb|DR803518.1|DR803518
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211471847|gb|FL299254.1|FL299254
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGAT
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGAT
EST: gi|76018908|gb|DT946078.1|DT946078
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211469324|gb|FL299243.1|FL299243
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211001837|gb|FL114783.1|FL114783
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211466794|gb|FL299225.1|FL299225
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAA
EST: gi|211469323|gb|FL299242.1|FL299242
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211001833|gb|FL114779.1|FL114779
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|78116755|gb|DV535142.1|DV535142
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|91870478|gb|EB400898.1|EB400898
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|148960852|gb|EE011528.2|EE011528
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211466796|gb|FL299227.1|FL299227
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGNTG
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTT-GAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTG
EST: gi|211469317|gb|FL299236.1|FL299236
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGA
EST: gi|211469326|gb|FL299245.1|FL299245
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|71446263|gb|DR827313.1|DR827313
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|71437898|gb|DR818948.1|DR818948
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211466800|gb|FL299231.1|FL299231
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211469331|gb|FL299250.1|FL299250
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211466801|gb|FL299232.1|FL299232
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211471851|gb|FL299258.1|FL299258
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAG
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAG
EST: gi|211469322|gb|FL299241.1|FL299241
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211466803|gb|FL299234.1|FL299234
EST:     AGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCMCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTG
genomic: AGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACC-CCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTG
EST: gi|211469329|gb|FL299248.1|FL299248
EST:     CAGGACACCTTCGCTCAGGAGANCGNCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGANCGAGCTGGCG
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCG
EST: gi|211471856|gb|FL299263.1|FL299263
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211471855|gb|FL299262.1|FL299262
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|71770078|gb|DR968015.1|DR968015
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211469327|gb|FL299246.1|FL299246
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211469321|gb|FL299240.1|FL299240
EST:     -AGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGT
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGT
EST: gi|71323571|gb|DR798454.1|DR798454
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGA
EST: gi|211469318|gb|FL299237.1|FL299237
EST:     CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACAT                         GTTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTT
genomic: CAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTT-GAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTT-

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 40 (upstream exon), 48 (downstream exon)
Score: 66

GCACCGGGGCAGCGGTCGCCGGTGAGGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 30

GCACCGGGGCAGCGGTCGCCGGTGAGGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 35

GCACCGGGGCAGCGGTCGCCGGTGAGGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG


Block sizes: 37 (upstream exon), 49 (downstream exon)
Score: 34

GCACCGGGGCAGCGGTCGCCGGTGAGGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCTCAGGAGACCGCCGTCACTATCGAGGACCCCAACATgtactgtgct ... taacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcatgtcgtttcatctaatactgacacgagtacgtgttggcttaacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG
               atctaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgtgctgcacttgtatatgcatgtcgtttcatctaatactgacacgagtacgtgttggcttaacctgaagGTTGAGGTACGTGGAGACCGAGCTGGCGAAGAAGAGGGGTAAGATGGTTGATGTGGGACACAAGGAAGAGATGGACCATGTGGACGAGCTCTATACCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA