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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attagtagttcatttgctttcttttcttgagcccttagttttcatacaaaagccatgtgtaaaaagcatgctgaatggtgctacttattcacgattctagGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGTTCATCCTAGAATGAAGGCTGCCGCGTCGGCTCTTTTTGGATTGCCAGAC

Basic information

species Zea mays
transcript GRMZM2G015854_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015854_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 3'ss of exon 3
attagtagttcatttgctttcttttcttgagcccttagttttcatacaaaagccatgtgtaaaaa-----gcatgctga-atggtgctacttattcacgattctagGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGTTCATCCTAGAATGAAGGCTGCCGCGTCGGCTCTTTTTGGATTGCCAGAC
      | ||  ||  | |  || |||| | |  ||| ||| | ||| ||| | |  ||||||||     ||||||||| || ||  ||||| || | ||| |||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||  | || || ||| | || |||||||  || | |
-----gaatttcttcacatctttgtcttaa-cagttaatttccttaccaaaactaaatgtaaaaaccaacgcatgctgacatagttttacttgttaatgatgctagGTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGTTCATGCTAGAATGAAAACAGCTGCTTCGTCACTCTTTGGATCCCCTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082628|gb|EE171828.2|EE171828
EST:     ACGAATGTTCTGTGTAGTGACTGGAATAGCTGGAAGGATTCAATTATCTG                         GTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGT
genomic: ACGAATGTTCTGTGTAGTGACTGGAATAGCTGGAAGGATTCAATTATCTGgttagtatta ... acgattctagGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGT
EST: gi|148938281|gb|EC882584.2|EC882584
EST:     ACGAATGTTCTGTGTAGTGACTGGAATAGCTGGAAGGATTCAATTATCTG                         GTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGT
genomic: ACGAATGTTCTGTGTAGTGACTGGAATAGCTGGAAGGATTCAATTATCTGgttagtatta ... acgattctagGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaaagccatgtgtaaaaagcatgctgaatggtgctacttattcacgattctagGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAGAATGTTCATCCTAGAATGAAGGCTGCCGCGTCGGCTCTTTTTGGATTGCCAGAC
            tgtaaaaa  TA-rich tract