1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atggctgtgaacccctgataaatagattctgtagttcaatagcagtggtgattaatattcattatccacttacaaatttttgttcttctctaacaaacagGGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACTATTCATGAAATCAAACATTTGTGGAGGAAGCATCGCTGTGCTAGGACA
species | Zea mays |
transcript | GRMZM2G015854_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAG GGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACEST: gi|71315019|gb|DR794128.1|DR794128
genomic: GGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggat ... taacaaacagGGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCAC
EST: GGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAG GGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACEST: gi|50326788|gb|CO521914.1|CO521914
genomic: GGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggat ... taacaaacagGGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCAC
EST: GGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAG GGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCAC
genomic: GGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggat ... taacaaacagGGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCAC
tggtgattaatattcattatccacttacaaatttttgttcttctctaacaaacagGGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACTATTCATGAAATCAAACATTTGTGGAGGAAGCATCGCTGTGCTAGGACA
ctctaac putative branch site (score: 43)
tttttgttcttctct CT-rich tract
attaatattcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggctgtgaacccctgataaatagattctgtagttcaatagcagtggtgattaatattcattatccacttacaaatttttgttcttctctaacaaacagGGGACTGTATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACTATTCATGAAATCAAACATTTGTGGAGGAAGCATCGCTGTGCTAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- ggctgtg
- - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - -tggtgat