1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatggccaggcgttaggtggggattgtttcaaattgaccgtgtaaatggtttgatggtgctgatccttgttggcctgtcccgtgtacatttttttttcagCTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTGTAACTGTTGCGTCCGTTGGTGACTCACGTTGTGTCCTTGATGCTGCGGG
species | Zea mays |
transcript | GRMZM2G015610_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGCTCGTCGCCGGGTTCGTCAAGACCGACAAGGATTTTCAAACTAAAG CTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTGEST: gi|148930783|gb|EC873124.2|EC873124
genomic: GGCGCTCGTCGCCGGGTTCGTCAAGACCGACAAGGATTTTCAAACTAAAGgtaactgaaa ... tttttttcagCTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTG
EST: GGCGCTCGTCGCCGGGTTCGTCAAGACCGACAAGGATTTTCAAACTAAAG CTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTGEST: gi|211205708|gb|FL335686.1|FL335686
genomic: GGCGCTCGTCGCCGGGTTCGTCAAGACCGACAAGGATTTTCAAACTAAAGgtaactgaaa ... tttttttcagCTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTG
EST: GGGTTCGTCAAGACCGACAAGGATTTTCAAACTAAAG CTCATTCCTCGGGG
genomic: GGGTTCGTCAAGACCGACAAGGATTTTCAAACTAAAGgtaactgaaa ... tttttttcagCTCATTCCTCGGGG
atggtttgatggtgctgatccttgttggcctgtcccgtgtacatttttttttcagCTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTGTAACTGTTGCGTCCGTTGGTGACTCACGTTGTGTCCTTGATGCTGCGGG
tgctgat putative branch site (score: 124)
tacatttttttttc putative PPT
tgtacattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggccaggcgttaggtggggattgtttcaaattgaccgtgtaaatggtttgatggtgctgatccttgttggcctgtcccgtgtacatttttttttcagCTCATTCCTCGGGGACAACCGTGACACTTGCCATAATTGATGGCTCCGTTGTAACTGTTGCGTCCGTTGGTGACTCACGTTGTGTCCTTGATGCTGCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - gccaggc
- - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgctg