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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagttattaaatatttttgtgaaatgaacaagaccacatcacattattcttgtaggagtaaatctgagaaatattttgccttttattttgtgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG

Basic information

species Zea mays
transcript GRMZM2G015361_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211059917|gb|FL040881.1|FL040881
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GNTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062868|gb|FL040893.1|FL040893
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18162263|gb|BM332102.1|BM332102
EST:     CCTCTACAAGCTCAAGCTCGAAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|40303457|gb|CK347844.1|CK347844
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059916|gb|FL040880.1|FL040880
EST:     CTCTACAAGCTCAAGCTCGGRAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CTCTACAAGCTCAAGCTCGG-AGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059912|gb|FL040876.1|FL040876
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056909|gb|FL040862.1|FL040862
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCAC-ATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|84980111|gb|DW530460.1|DW530460
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056905|gb|FL040858.1|FL040858
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|78087625|gb|DV516018.1|DV516018
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062865|gb|FL040890.1|FL040890
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32942546|gb|CF047365.1|CF047365
EST:     CTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|28911426|gb|BM266772.2|BM266772
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062860|gb|FL040885.1|FL040885
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18173412|gb|BM348800.1|BM348800
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|9255410|gb|BE345878.1|BE345878
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059918|gb|FL040882.1|FL040882
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GRTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18175414|gb|BM350750.1|BM350750
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059910|gb|FL040874.1|FL040874
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|28986306|gb|CB351070.1|CB351070
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|31250280|gb|CD219304.1|CD219304
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|60350035|gb|DN217008.1|DN217008
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|91052746|gb|EB163164.1|EB163164
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|113704190|gb|EE681694.1|EE681694
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18174647|gb|BM350035.1|BM350035
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059905|gb|FL040869.1|FL040869
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         NNTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32940814|gb|CF045633.1|CF045633
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062864|gb|FL040889.1|FL040889
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCA-CATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062869|gb|FL040894.1|FL040894
EST:     CCTCTACAARCTCAAGCTCGGARAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059909|gb|FL040873.1|FL040873
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32870464|gb|CF010146.1|CF010146
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059911|gb|FL040875.1|FL040875
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|17932493|gb|BM269453.1|BM269453
EST:     CAAGCTCGGAGAAATCGTGACCACCATCCNTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056913|gb|FL040866.1|FL040866
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32851462|gb|CD991143.1|CD991143
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|47962387|gb|CN845096.1|CN845096
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|28911283|gb|BM339046.2|BM339046
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18166225|gb|BM336064.1|BM336064
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32862562|gb|CF002244.1|CF002244
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTAC-ATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|51592624|gb|CV071770.1|CV071770
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056910|gb|FL040863.1|FL040863
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCA-CATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056908|gb|FL040861.1|FL040861
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059908|gb|FL040872.1|FL040872
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32909052|gb|CF013864.1|CF013864
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18163003|gb|BM332842.1|BM332842
EST:     ATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: ATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|5567066|gb|AI881977.1|AI881977
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056915|gb|FL040868.1|FL040868
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056914|gb|FL040867.1|FL040867
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056912|gb|FL040865.1|FL040865
EST:     CCTSTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAAMATTAGCTTNACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062861|gb|FL040886.1|FL040886
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32849424|gb|CD989105.1|CD989105
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|76290967|gb|DV030535.1|DV030535
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|37396771|gb|CF635679.1|CF635679
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|113704355|gb|EE681859.1|EE681859
EST:     GTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: GTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|101384355|gb|EB814222.1|EB814222
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|32910785|gb|CF015597.1|CF015597
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062859|gb|FL040884.1|FL040884
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACT-TTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|17930223|gb|BM267183.1|BM267183
EST:     GTGACCACCATCCNTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: GTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|9255278|gb|BE345746.1|BE345746
EST:     CTCTACAAGTCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CTCTACAAG-CTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056911|gb|FL040864.1|FL040864
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211056907|gb|FL040860.1|FL040860
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|18176263|gb|BM351281.1|BM351281
EST:     TCGGAGGAAATCGTGACCCCCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: TCGGA-GAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|33103129|gb|CF063089.1|CF063089
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|89252854|gb|DY624640.1|DY624640
EST:     GTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: GTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211062862|gb|FL040887.1|FL040887
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: gi|211059913|gb|FL040877.1|FL040877
EST:     CTCTASSAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGT
genomic: CTCTAC-AAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGT
EST: gi|211062867|gb|FL040892.1|FL040892
EST:     CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCG                         GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 100

GAGATGAGGATCCTTATGGTTGGTCTCGATGCAGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 50

GAGATGAGGATCCTTATGGTTGGTCTCGATGCAGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 18

GAGATGAGGATCCTTATGGTTGGTCTCGATGCAGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 224

GAGATGAGGATCCTTATGGTTGGTCTCGATGCAGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAAATCGTGACCACCATCCCTACAATCGgtgagaaact ... tgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttgtaggagtaaatctgagaaatattttgccttttattttgtgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG
                       aaatattttgcctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagttattaaatatttttgtgaaatgaacaagaccacatcacattattcttgtaggagtaaatctgagaaatattttgccttttattttgtgatttcaagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - -tgaaatg
- - - - - - - - - - - - - aacaaga
- - - - - - - - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaata