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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataaaaatgattcacgttgatttactgaactaaggaaagcttttgtgttctttcttggcttgctaaaacttctgtaatccagtaatcgtcctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG

Basic information

species Zea mays
transcript GRMZM2G015324_T06
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015324_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 3'ss of exon 5
aataaaaatgattcacgtt--gatttactgaactaaggaaagcttttgtgttctttct-tggcttgctaaaacttctgtaatccagtaatcgtc-ctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG
    ||| |  || || |    | | ||  |  || |  | |||||    | | | || | | | | |   |  |      || | |  |  || || || ||||| || |||||||| |||||||||||||| ||||||||||||||  |||||||||| || |||||||||||||| || |||
----aaacttctttacctctgaagtaacatatttacgacatgctttaacatacatcctattgttcgttggtaactaaaatttctattcttattctcttgtacagGTAAAACAGATGTTGATTGCTCTTCTAGGTGAATCAGAAATGAGATTATCTGATGAGATTATTGAGACAATCCTTGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttctttcttggcttgctaaaacttctgtaatccagtaatcgtcctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG
                tgctaaa  putative branch site (score: 2)
                                         tcgtcct  putative PPT
                   taaaactt  TA-rich tract