ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...atagcaccgagcacacgcacttagacttagacgatgcactatcgtgattaaacagtaatacagtatgcctactcaaatgtttctgttttttgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGAAGTCAAATTTTGATGAATTGGTTGAG

Basic information

species	Zea mays
transcript	GRMZM2G014676_T01
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G014676_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g34670.2 (Oryza sativa), 3'ss of exon 2

-atagcaccgagcacacgcacttagacttagacgatgcactatcgtgattaaacagtaa-tacagtatgcctact-caaatgtttctgttttttgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGAAGTCAAATTTTGATGAATTGGTTGAG----------------------
   |      | ||   ||||||  |    || | ||||   |  || ||  ||  |   | |  | ||  |||  || |  | | | |||||| ||| ||||||||| ||| || | || |||||||||||||||||||||||||||||  ||||||| |||||||||||| | ||||||                      
ctcaaagtaaaccatgtgcacttgaat---gatgctgcaactttttgtttgtacttttgctgccttttgtgtacagcatacttatgttttttttcctgtgcagAAAACTATGACTGAAGGCAAAGAATACTGTGAAAGGAAAATTAATTTGCTGAAGTCTAATTTTGATGAACTAGTTGAGGTATGCTATTGACTTGTCACCA

upper sequence: GRMZM2G014676_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g34670.1 (Oryza sativa), 3'ss of exon 2

-atagcaccgagcacacgcacttagacttagacgatgcactatcgtgattaaacagt-aatacagtatgcctact-caaatgtttctgttttttgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGAAGTCAAATTTTGATGAATTGGTTGAG
   |      | ||   ||||||  |    || | ||||   |  || ||  ||  |   | |  | ||  |||  || |  | | | |||||| ||| ||||||||| ||| || | || |||||||||||||||||||||||||||||  ||||||| |||||||||||| | ||||||
ctcaaagtaaaccatgtgcacttgaat---gatgctgcaactttttgtttgtacttttgctgccttttgtgtacagcatacttatgttttttttcctgtgcagAAAACTATGACTGAAGGCAAAGAATACTGTGAAAGGAAAATTAATTTGCTGAAGTCTAATTTTGATGAACTAGTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211395121|gb|FL384068.1|FL384068

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211230373|gb|FL422682.1|FL422682

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACT
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACT

EST: gi|211271655|gb|FL410591.1|FL410591

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACT
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACT

EST: gi|211135788|gb|FL400333.1|FL400333

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGG-AAAGAATACT
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACT

EST: gi|60395987|gb|DN228857.1|DN228857

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211201879|gb|FL397393.1|FL397393

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|67012485|gb|CO441234.1|CO441234

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|113679307|gb|DW836829.1|DW836829

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTA
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTA

EST: gi|211206826|gb|FL384239.1|FL384239

EST:     ACGACGCGAAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211286039|gb|FL393410.1|FL393410

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAS                         MAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211437386|gb|FL426822.1|FL426822

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGT
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGT

EST: gi|113704279|gb|EE681783.1|EE681783

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211290380|gb|FL395532.1|FL395532

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTG

EST: gi|211502510|gb|FL422026.1|FL422026

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211332538|gb|FL409859.1|FL409859

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211251912|gb|FL397015.1|FL397015

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|60346501|gb|DN213474.1|DN213474

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211376470|gb|FL385359.1|FL385359

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211173979|gb|FL462219.1|FL462219

EST:     GCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: GCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|26560008|gb|CA832243.1|CA832243

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|148933216|gb|EC876868.2|EC876868

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211475869|gb|FL467334.1|FL467334

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211202327|gb|FL412255.1|FL412255

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211211636|gb|FL368407.1|FL368407

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|32805339|gb|CD957575.1|CD957575

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTA
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTA

EST: gi|4834976|gb|AI670202.1|AI670202

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211309649|gb|FL419256.1|FL419256

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|87156107|gb|DY400896.1|DY400896

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211450012|gb|FL396735.1|FL396735

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211250184|gb|FL420128.1|FL420128

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|4572862|gb|AI586511.1|AI586511

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|166672017|gb|EG297621.1|EG297621

EST:     CGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: CGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211212734|gb|FL416182.1|FL416182

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAA
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAA

EST: gi|211520823|gb|FL376991.1|FL376991

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|5439377|gb|AI820298.1|AI820298

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|37387036|gb|CF630710.1|CF630710

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211201664|gb|FL383390.1|FL383390

EST:     ACGACGCGGAGAAGGTCCTCGYCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGGAAAGA
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGG-AAAGA

EST: gi|211192668|gb|FL425759.1|FL425759

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211426758|gb|FL418443.1|FL418443

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211282155|gb|FL373322.1|FL373322

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|37381730|gb|CF627766.1|CF627766

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|60398107|gb|DN230923.1|DN230923

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211207034|gb|FL397426.1|FL397426

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATYTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211536511|gb|FL409034.1|FL409034

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|17930646|gb|BM267606.1|BM267606

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

EST: gi|211153083|gb|FL375807.1|FL375807

EST:     ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG                         AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 167

GAAGATGCTCGTGCCGCTTACGGCGTCCCTCTACGTTCCCGGTTCACTGGACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGAAGTCAAATTTTGATGAATTGGTTGAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 129

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 127

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 85

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

gattaaacagtaatacagtatgcctactcaaatgtttctgttttttgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGAAGTCAAATTTTGATGAATTGGTTGAG

                                  tttctgttttttgct  CT-rich tract
                             aaatgttt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atagcaccgagcacacgcacttagacttagacgatgcactatcgtgattaaacagtaatacagtatgcctactcaaatgtttctgttttttgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGAAGTCAAATTTTGATGAATTGGTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-tagcacc
- - - - - - -cacgcac
- - - - - - - - - - - - - - - - gatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctac