1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtattgtatgtcatttttatttttgaatggagtgttgtaggtattgttttaaaaataatcatatttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGC
species | Zea mays |
transcript | GRMZM2G014596_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTG AAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGEST: gi|71445329|gb|DR826379.1|DR826379
genomic: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattg ... ttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
EST: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTG AAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGEST: gi|71772898|gb|DR970821.1|DR970821
genomic: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattg ... ttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
EST: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTG AAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGEST: gi|71773272|gb|DR971181.1|DR971181
genomic: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattg ... ttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
EST: GATGCGCTTCAAGGTCATAGAGAATGGGTG AAGTTGACTTTCTGGGACAGTGGCATCATAAACACCTTGTTAAGTTGATTGEST: gi|71426555|gb|DR807605.1|DR807605
genomic: GATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattg ... ttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
EST: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTG AAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGEST: gi|101392588|gb|EB818224.1|EB818224
genomic: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattg ... ttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
EST: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTG AAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
genomic: CAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattg ... ttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTG
tttttgaatggagtgttgtaggtattgttttaaaaataatcatatttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGC
tatttcc CT-rich tract
taggtattgttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattgtatgtcatttttatttttgaatggagtgttgtaggtattgttttaaaaataatcatatttccatgcagAAGTTGACTTTCTGGGACAGTTGCATCATAAACACCTTGTTAAGTTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG