1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgttccgtctagaattgtgaagcgctcgtcatccctttttcttctcggggttctgggtttcatgtgagtgactgtggcgtgtttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTGTTCTGGCTATTTGCTTTCCACTGAAGTAACCGTTAGACTGTAGTGTGA
species | Zea mays |
transcript | GRMZM2G014367_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCC AGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTEST: gi|29544530|gb|CB604910.1|CB604910
genomic: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCTgtacgttccg ... ttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTT
EST: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCC AGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTEST: gi|76018572|gb|DT945742.1|DT945742
genomic: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCTgtacgttccg ... ttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTT
EST: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCC AGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTEST: gi|71422431|gb|DR805730.1|DR805730
genomic: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCTgtacgttccg ... ttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTT
EST: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCC AGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTEST: gi|110533097|gb|EE037277.1|EE037277
genomic: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCTgtacgttccg ... ttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTT
EST: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCC AGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTT
genomic: TCCGGCAGGAGCTCAACGCTACCAGCAAGAAGATCGACAAGCTCAAAGCTgtacgttccg ... ttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTT
tttcttctcggggttctgggtttcatgtgagtgactgtggcgtgtttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTGTTCTGGCTATTTGCTTTCCACTGAAGTAACCGTTAGACTGTAGTGTGA
tgtttcttt CT-rich tract
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttccgtctagaattgtgaagcgctcgtcatccctttttcttctcggggttctgggtttcatgtgagtgactgtggcgtgtttctttgcagAGCAAGCAAGAAGAGGAAGCAAAGAAGCTCATGGAAATTTAGTTGGTGTTTGTTCTGGCTATTTGCTTTCCACTGAAGTAACCGTTAGACTGTAGTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG