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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC

Basic information

species Zea mays
transcript GRMZM2G014313_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 3'ss of exon 2
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtg-actgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                                                                           | ||| |||  ||||       ||  |||  ||    |||| || | |         || |  | |   |||| |||  ||       | |  |||   ||||||||||| ||||| |||||||| || || || || || ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
-------------------------------------------------------------------------ctgctgaatgttttgatttgatactaacatgcattactccact-aacgaatcga---gtattatcttttgggtgt-tattttgacctt--tcttgagtacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACC

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G44410.1 (Glycine max), 3'ss of exon 3
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttca-aacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                                                                              ||   |  | |  ||| || || |   ||    |  |||  |     | ||   | ||||   | ||      | |   ||    || |||    | || ||||||||||  |  |   ||||||||| |   | |  |||||  | || |||   ||||| ||||||||||||||||||||||| ||||||||||| ||||
------------------------------------------------------------------------------gaagttagtaa--ctttgtcatgagatttgtgcagtactttaaatgatcttgtgcctgaccaattcaacagtgaactgattgtttgtgtctttccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAACC

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                                                                 |   ||    | |    |   | ||   |  | |  ||  ||||  |   ||| || | |  |  | |||   | |     |||| | ||          | |  |   ||||||| ||||| || || |||||||| |||| ||| || || ||  | || || || |||||||||||||| |||||||||||||| ||||||||||| || |
--------------------------------------------------------------gtctctttgttttgctagaggaagtaat--ctgttca--atagtttctga---tgagtgtattgatggatatggaatgtgagaagtatgtggt----------tttgtttgttgtagGAGAATGGTTTGCTACATGTTCCCAAGGGAGAAGCTCAAAATCCACAAGCTGCTATGTTTTCTGATCCTAACATGGCCATGGATATGATGAAGAAAAATC

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgactt-ctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                                                                                || |  ||| |    |     |      | | |    | ||  |  |  |   ||  ||  || | ||    |  ||   |   |   |    |  | |||||||||||||||| |||||||| ||||   | ||||| || |||||||||   ||||| ||||||||||||||||| ||||| ||||||||||||||||
-------------------------------------------------------------------------------ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatt-tgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ16947 (Selaginella moellendorffii), 3'ss of exon 2
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                                                                             |  | | ||  | |   |  |  ||   ||     |  | ||           | |  ||       |   ||   || ||| |    ||| ||| |   ||||||||||  |  | |||||||||||||   | |  ||||| |  |||||    ||| |||| || ||||||||||| ||||||||||||||||||||| 
----------------------------------------------------------------------------gtaggcgagaaaaaggaaaaatgctacttttctttgcggtcaagaag-------aaagaac-------gctgatgctgtattttc----tcttgtgcc---agGAAAATGGGCTGTTACATGTTCCAAAGGGCCAGGGCCAGAACGTCCAGGCTCAAATGCTTTCGGACCCAAACATGGCAATGGACATGATGAAGAAGAACT

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ16068 (Selaginella moellendorffii), 3'ss of exon 2
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                                                                  | | || |  |  ||    ||| | |||   | ||  | |    || |  |||                        ||   ||   || ||| |    ||| ||| |   ||||||||||  |  | |||||||||||||   | |  ||||| |  |||||    ||| |||| || ||||||||||| ||||||||||||||||||||| 
------------------------------------------------------------------gtaggcgagaaaaagaaaaatgctacttttct-ttgcggtcaagaagaaagaa------------------------agctgatgctgtattttc----tcttgtgcc---agGAAAATGGGCTGTTACATGTTCCAAAGGGCCAGGGCCAGAACGTCCAGGCTCAAATGCTTTCGGACCCAAACATGGCAATGGACATGATGAAGAAGAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211497847|gb|FL218030.1|FL218030
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211291996|gb|FL370573.1|FL370573
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211067136|gb|FL218067.1|FL218067
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGGTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064386|gb|FL218050.1|FL218050
EST:     CATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACNACCA-CGAG                         GGAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC
genomic: CATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTAC-ACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC
EST: gi|211067130|gb|FL218061.1|FL218061
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211092572|gb|FL395896.1|FL395896
EST:     CATCCCGGNCAAGGCTTTNCA-GGCACGCAAGTTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCANGCA
genomic: CATCCCGGCCAAGGCTTT-CAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211159436|gb|FL370487.1|FL370487
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAAACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|14202406|gb|BG836083.1|BG836083
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211497851|gb|FL218034.1|FL218034
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAATGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|15053265|gb|BI358810.1|BI358810
EST:     CATCCNCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: CATCC-CGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211069863|gb|FL218071.1|FL218071
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211497852|gb|FL218035.1|FL218035
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211434427|gb|FL412915.1|FL412915
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211067128|gb|FL218059.1|FL218059
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211073353|gb|FL368259.1|FL368259
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAAGACGCGC
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAA-GACGCGC
EST: gi|211064381|gb|FL218045.1|FL218045
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211109231|gb|FL386007.1|FL386007
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211498980|gb|FL377920.1|FL377920
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211291993|gb|FL370570.1|FL370570
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211069861|gb|FL218069.1|FL218069
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211497849|gb|FL218032.1|FL218032
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAG
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAG
EST: gi|211497850|gb|FL218033.1|FL218033
EST:     TCATCCCGGNCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGGTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|50337385|gb|CO532511.1|CO532511
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211069870|gb|FL218078.1|FL218078
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211099802|gb|FL386852.1|FL386852
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|94477440|gb|EB706398.1|EB706398
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211067129|gb|FL218060.1|FL218060
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|71443117|gb|DR824167.1|DR824167
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCCAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064377|gb|FL218041.1|FL218041
EST:     CATCCCGGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCNACGAG                         GAAAATCGGATTACTTCATGTTCCAAAGGGAAGACGCGCAGAAGGCTCAGG
genomic: CATCCCGG-CCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAAT-GGATTACTTCATGTTCCAAAGG-AAGACGCGCAGAAGGCTCAGG
EST: gi|211011084|gb|FL375749.1|FL375749
EST:     TCATCCCGGCCAAGACTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAACATGGATTACTTCATGTTCCAAAGGAAGACGCGCACAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|32936209|gb|CF041021.1|CF041021
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211011987|gb|FL416045.1|FL416045
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211069871|gb|FL218079.1|FL218079
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064382|gb|FL218046.1|FL218046
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211269406|gb|FL418839.1|FL418839
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|15545720|gb|BI643514.1|BI643514
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211067131|gb|FL218062.1|FL218062
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211482792|gb|FL423815.1|FL423815
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064376|gb|FL218040.1|FL218040
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211533497|gb|FL409016.1|FL409016
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064385|gb|FL218049.1|FL218049
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064387|gb|FL218051.1|FL218051
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|15590500|gb|BI675116.1|BI675116
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211266592|gb|FL404013.1|FL404013
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211069864|gb|FL218072.1|FL218072
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064384|gb|FL218048.1|FL218048
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA
EST: gi|211497854|gb|FL218037.1|FL218037
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211421551|gb|FL418421.1|FL418421
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|32864290|gb|CF003972.1|CF003972
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211407987|gb|FL375638.1|FL375638
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211426228|gb|FL393460.1|FL393460
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCAT
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCAT
EST: gi|211069866|gb|FL218074.1|FL218074
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCA
EST: gi|211497848|gb|FL218031.1|FL218031
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGG-ATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC
EST: gi|8367730|gb|BE050675.1|BE050675
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211064383|gb|FL218047.1|FL218047
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211067125|gb|FL218056.1|FL218056
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
EST: gi|211067137|gb|FL218068.1|FL218068
EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA
EST: gi|211518357|gb|FL388530.1|FL388530
EST:     TCATCCCGGTCAAGGGTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGGTCCAAAGGAAGACGCGCATAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
                     tgtatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC