1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacaatttatcgctagtactgtttcatcattatatacacttgaatatgataagcaatgtagtggtactgtcactcgaaccctgtagagcccattttctttagagctgacgaagtagcattttgctatatgtgcattgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAGCCACCCCTTGGGTCGTGGCTGCTTGGCACCCACCTTGGTATAACAGCTA
species | Zea mays |
transcript | GRMZM2G014193_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAG GAGTTCAGAACTCGTGGTTAGAAAAGGATTTGCAGAGGGTTGATCGACGAGEST: gi|78093471|gb|DV521845.1|DV521845
genomic: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaattt ... ttgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
EST: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAG GAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAGEST: gi|32799587|gb|CD951823.1|CD951823
genomic: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaattt ... ttgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
EST: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAG GAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
genomic: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaattt ... ttgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
ccattttctttagagctgacgaagtagcattttgctatatgtgcattgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAGCCACCCCTTGGGTCGTGGCTGCTTGGCACCCACCTTGGTATAACAGCTA
agctgac putative branch site (score: 3)
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatttatcgctagtactgtttcatcattatatacacttgaatatgataagcaatgtagtggtactgtcactcgaaccctgtagagcccattttctttagagctgacgaagtagcattttgctatatgtgcattgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAGCCACCCCTTGGGTCGTGGCTGCTTGGCACCCACCTTGGTATAACAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT