Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgactctagctattggtttgaggtattgacccaaacatctattgaactcctgtctggtaacagaagcttatattactgtcacttatgtttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG

Basic information

species Zea mays
transcript GRMZM2G014116_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014116_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 2
tgttgactctagctattggtttgaggtattgacccaaacatctattgaactcctgtctggtaacagaagcttat----attactgtcacttatgtttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG
     |   |  || ||  | |  |  ||           |  |||  |     ||   | |   |  || | |    | |  | | | |  |  || || |||||||| ||||| ||||||||||||||||||||||||||||| || || |||| ||| |||||| | || |||||||| || ||  |||||||||| ||||
----aatcatgcctgtttatgtatgcaatactattgctgctgcattataacttggttatgcacatgtggcatgtctcaactcttctaattctttatttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCAGACATGGACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211424451|gb|FL201057.1|FL201057
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|17931575|gb|BM268535.1|BM268535
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31358688|gb|CD443045.1|CD443045
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429639|gb|FL201076.1|FL201076
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427058|gb|FL201071.1|FL201071
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATCCCACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427045|gb|FL201058.1|FL201058
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|18166644|gb|BM336483.1|BM336483
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|32919590|gb|CF024402.1|CF024402
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31355001|gb|CD439358.1|CD439358
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211424445|gb|FL201051.1|FL201051
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGNCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACNTTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31355164|gb|CD439521.1|CD439521
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427059|gb|FL201072.1|FL201072
EST:     TAAACGACCAGATCGTTCTCCTATCTNAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAGAGCAGTGGAGTATATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|61236504|gb|DN586255.1|DN586255
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31355423|gb|CD439780.1|CD439780
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427052|gb|FL201065.1|FL201065
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429642|gb|FL201079.1|FL201079
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211424446|gb|FL201052.1|FL201052
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATNAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|14202839|gb|BG836516.1|BG836516
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427055|gb|FL201068.1|FL201068
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|6626373|gb|AW257905.1|AW257905
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATCTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427057|gb|FL201070.1|FL201070
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429638|gb|FL201075.1|FL201075
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|5555401|gb|AI881352.1|AI881352
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427047|gb|FL201060.1|FL201060
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211424450|gb|FL201056.1|FL201056
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427053|gb|FL201066.1|FL201066
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTATATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427056|gb|FL201069.1|FL201069
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|18161887|gb|BM331726.1|BM331726
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|18168671|gb|BM338511.1|BM338511
EST:     CAGATCGTTCTCCTATGTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: CAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427046|gb|FL201059.1|FL201059
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTATATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31350034|gb|CD434391.1|CD434391
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429636|gb|FL201073.1|FL201073
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|13515666|gb|BG517942.1|BG517942
EST:     CCAGCTTAAGCAG                         GCTATTACTGCTATGGGTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: CCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|108824160|gb|EC278168.1|EC278168
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|71448354|gb|DR829404.1|DR829404
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429640|gb|FL201077.1|FL201077
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427048|gb|FL201061.1|FL201061
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429641|gb|FL201078.1|FL201078
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|111991033|gb|EE331916.1|EE331916
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211424449|gb|FL201055.1|FL201055
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31354458|gb|CD438815.1|CD438815
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|32943215|gb|CF048034.1|CF048034
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGT
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGT
EST: gi|211427054|gb|FL201067.1|FL201067
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|31910184|gb|CD651297.1|CD651297
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211429637|gb|FL201074.1|FL201074
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211424448|gb|FL201054.1|FL201054
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA
EST: gi|211427049|gb|FL201062.1|FL201062
EST:     TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAG                         GCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTAATTTGACACCA
genomic: TAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 366

CGTCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCGTGGAAGACGCTAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 328

CGTCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCGTGGAAGACGCTAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 267

CGTCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCGTGGAAGACGCTAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 275

CGTCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCGTGGAAGACGCTAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctct ... tttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaactcctgtctggtaacagaagcttatattactgtcacttatgtttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG
            tggtaac  putative branch site (score: 275)
                                        ttatgtttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttgactctagctattggtttgaggtattgacccaaacatctattgaactcctgtctggtaacagaagcttatattactgtcacttatgtttattgcagGCTATTACTGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG