1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcatacttttatattgaagtgtctaactcctctgctacactttattttgtttgaactgaccctgctgtttcattaccatggtccatgggttctcaatcagCCCGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTTGGACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAG
species | Zea mays |
transcript | GRMZM2G013908_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGCCTCAGGAATGTTGAG CCCGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTTEST: gi|211477176|gb|FL315669.1|FL315669
genomic: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGCCTCAGGAATGTTGAGgtgaattacc ... tctcaatcagCCCGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTT
EST: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGTCTCAGGAATGTTGAG CCCGTATATGGATTTGCCTCTGGTGATCCATTEST: gi|211149894|gb|FL367822.1|FL367822
genomic: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGCCTCAGGAATGTTGAGgtgaattacc ... tctcaatcagCCCGTATATGGATTTGCCTCTGGTGATCCATT
EST: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGTCTCAGGAATGTTGAG CCCGTATATGGATTTGCCTCTGGTGATCCATTGCGTTTTAAGAGAGCTGTTEST: gi|74244039|gb|DT651953.1|DT651953
genomic: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGCCTCAGGAATGTTGAGgtgaattacc ... tctcaatcagCCCGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTT
EST: TTCTGACGGAGGATGATGTTGACAGTGCCCTGGGCCCCAGGAATGTTGAG CCCGAATTATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAAAGCTGT
genomic: TTCTGACGGCGGATGATGTTGACAGTGCCCTGGGCCTCAGGAATGTTGAGgtgaattacc ... tctcaatcagCCCGTAT-ATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGT
tttgtttgaactgaccctgctgtttcattaccatggtccatgggttctcaatcagCCCGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTTGGACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAG
aactgac putative branch site (score: 43)
ttctc putative PPT
tttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatacttttatattgaagtgtctaactcctctgctacactttattttgtttgaactgaccctgctgtttcattaccatggtccatgggttctcaatcagCCCGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTTGGACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAG
- - - - - - - - - - - - - - - -ctgctac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccatg