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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttgggattctcctgagtttatgtgttgctaatgttgtaacactgcaggcttagtgtctccttatctgttggtgatcgttgctacttttatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGCATTCGATCCCAGTGGTGACTCCTGCTGTATTATCGATG

Basic information

species Zea mays
transcript GRMZM2G013607_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76293836|gb|DV033404.1|DV033404
EST:     CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTG                         GAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
genomic: CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatct ... tatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
EST: gi|60340656|gb|DN207629.1|DN207629
EST:     GGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTG                         GAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
genomic: GGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatct ... tatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
EST: gi|32943773|gb|CF048592.1|CF048592
EST:     CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTG                         GAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
genomic: CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatct ... tatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaggcttagtgtctccttatctgttggtgatcgttgctacttttatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGCATTCGATCCCAGTGGTGACTCCTGCTGTATTATCGATG
                                         cttttatct  CT-rich tract
                                       tacttttat  TA-rich tract