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gtacaccccttccctgttgatgtttctagaatcacgatagtattgtaagtttgtaacatgcaaataatcctactattttttgaatattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATTATGCCTCAAGCTCTC
species | Zea mays |
transcript | GRMZM2G012964_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGEST: gi|17921887|gb|BM259538.1|BM259538
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGEST: gi|71306958|gb|DR789634.1|DR789634
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGEST: gi|17921559|gb|BM259210.1|BM259210
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGEST: gi|17970013|gb|BM276781.1|BM276781
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCEST: gi|18383766|gb|BM416966.1|BM416966
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCC
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGEST: gi|22489212|gb|BU049122.1|BU049122
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGEST: gi|17970204|gb|BM276968.1|BM276968
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
EST: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAG TGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
genomic: AGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGgtacacccct ... tattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAG
gtattgtaagtttgtaacatgcaaataatcctactattttttgaatattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATTATGCCTCAAGCTCTC
ttgtaac putative branch site (score: 98)
aaataatcctactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaccccttccctgttgatgtttctagaatcacgatagtattgtaagtttgtaacatgcaaataatcctactattttttgaatattttgtagTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATTATGCCTCAAGCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT