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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatgtttatactgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA

Basic information

species Zea mays
transcript GRMZM2G012416_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 3'ss of exon 2
tttatgtttat--actgtattggtagaacttatttggagagtttgca-tggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
 || |||  ||  |  ||||||   ||| || |  |     ||||||       ||| | | |   || | |   | ||| ||||  |    ||| | |||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||
-ttgtgtcaattcatagtattgtgtgaagttttcagctttctttgcaactatcatatagtaaggctatcttaatgatttt-ttttgttatgctat-actgcagAGGCCAGCGGATTAAGACCCGCAAACGGAATATTGCTGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTCCAGATTTATCTGGATAATGCTGGA

upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G47780.1 (Glycine max), 3'ss of exon 2
-tttat-gtttatactgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
 ||| | |  |||    | |  |   |  |||||  |  | ||  ||||   || |    | |   |||   |   | | ||||  | |  |       ||| ||||||||||||||||||||||| || |||||||| || ||  ||||||||||| ||||||| |||||| | || ||||| ||||||||||||| ||| 
ttttgtaggctattgcatgtgagcttatattattgtgttatttatcatgtatgtttaatttatgt-tgtgggcacttatcttttgtttatctccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGG-

upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G38530.1 (Glycine max), 3'ss of exon 2
tttatgtttatactgtattg-gtagaacttatttggagagtttgcatggcagtattgcatg-ttcatgt--aatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
   || ||| ||   |||||  |  | ||| | |       ||   |  ||    || ||  || ||||  |  |   ||| ||||  | |  |       ||| ||||||||||||||||||||||| ||||||||||| || ||  ||||||||||| ||||||| |||||| | || ||||| ||||||||||||| ||| 
---at-tttgtaggctattgcatgtagcttctattattgtgttatttatcatgtatgtataatttatgttgaggctcttttcttttgtttatctcaatccccagTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGT

upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: AT5G36230.1 (Arabidopsis thaliana), 3'ss of exon 2
-tttatgtttatactgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
 ||  || |    ||   ||   ||   ||| | ||| |  ||     |  || | |||| |   ||||  |        | | || |  ||    |||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| | || ||||||||| | || ||||| ||    ||||||| ||| 
gttagtgatacctcttctttttgagtttttactaggacaaattttgatgttgt-tagcatttctttgtatacttagaagctattcttatgtacg--tgcagAGGTACGCGGATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATTTACCATGATAATGCTGGT

upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: AT1G65220.1 (Arabidopsis thaliana), 3'ss of exon 2
------tttatgtttatac-tgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactttattttcctcaattattat-tgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
      |||| |||  | | | | ||| ||||| || ||   |   |  ||||   ||| | | ||| |  ||||||    |   |||   |  ||| |||| || ||||| ||||||||||||||||||||  |||||||||| |||||| | ||||||||  | || ||||||||| | |||||||| ||| ||||||||| ||| 
ctcttctttaagttgtttcatcttttgttagaaattgtt---aacatgagcatta-agtttagaatgat--tgtaatt--ataagtttgtgtttatttttatgtgtagAGGTACGCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCACTAGTTCAGATTTATCTGGATAATGCTGGT

upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 3'ss of exon 3
tttatgtttat--actgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactt--tattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
 |  ||   |   |||  | | |  |||| |  |||  | || |   ||  |  |     |||| |  ||| ||  ||   ||||   || ||| || || ||| ||||||||||||||||||||||| |||||||||||||| ||  ||||||||||| ||||  | |||||| | || ||||| ||| ||||||||| ||| 
-tggtggaaagtaactacagtagc-gaacattcttgacgtgtgtttttgttatcaa-atttgttgacataagcctgttgtcatttgtttctattttt-ttccagTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAACATTTGCAGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGT

upper sequence: GRMZM2G012416_T04 (Zea mays), 3'ss of exon 2
lower sequence: EFJ06557 (Selaginella moellendorffii), 3'ss of exon 2
tttatgtttatactgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
                               |  | |  ||   ||    | ||||  | ||  | |  |    ||| ||               |  || ||||||||||||||||||||||| ||||||||||||  ||| ||||||||  | || ||| | ||||| || || |||||||| |||||| ||| ||| 
------------------------------gtaagggctttgagattcttgcattg-gttttggtttggtttggtttgttcatgatttgggcgtgtatagTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAATTCCGTTGGACCCATCTTCTTTCGCGGATGCTATAGTCCAGATCTACTTGGATCATGCTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101381678|gb|EB812896.1|EB812896
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCTTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|37424501|gb|CF649983.1|CF649983
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259385|gb|FK951998.1|FK951998
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|31558443|gb|CD527655.1|CD527655
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|76280388|gb|DV019956.1|DV019956
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|33102379|gb|CF062339.1|CF062339
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254503|gb|FK951971.1|FK951971
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259383|gb|FK951996.1|FK951996
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254496|gb|FK951964.1|FK951964
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211256956|gb|FK951990.1|FK951990
EST:     CTCGAAGGAGAARGCCCACTCTTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACC
genomic: CTCGAAGGAGAA-GCCCACTC-TTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACC
EST: gi|211254495|gb|FK951963.1|FK951963
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCMTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211261822|gb|FK952012.1|FK952012
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254494|gb|FK951962.1|FK951962
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|31361803|gb|CD446160.1|CD446160
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259384|gb|FK951997.1|FK951997
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254508|gb|FK951976.1|FK951976
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259388|gb|FK952001.1|FK952001
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211261823|gb|FK952013.1|FK952013
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211085269|gb|FK951961.1|FK951961
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259381|gb|FK951994.1|FK951994
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211256943|gb|FK951977.1|FK951977
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259387|gb|FK952000.1|FK952000
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|18964880|gb|BM661263.1|BM661263
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|22490494|gb|BU050417.1|BU050417
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|67030352|gb|CO459101.1|CO459101
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|78086543|gb|DV514936.1|DV514936
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|101395590|gb|EB819724.1|EB819724
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211261821|gb|FK952011.1|FK952011
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254500|gb|FK951968.1|FK951968
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254502|gb|FK951970.1|FK951970
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211256946|gb|FK951980.1|FK951980
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211256950|gb|FK951984.1|FK951984
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259392|gb|FK952005.1|FK952005
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254507|gb|FK951975.1|FK951975
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGATCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211254498|gb|FK951966.1|FK951966
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211259380|gb|FK951993.1|FK951993
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|76936477|gb|DV174746.1|DV174746
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211361941|gb|FL208805.1|FL208805
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211256951|gb|FK951985.1|FK951985
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|76280344|gb|DV019912.1|DV019912
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|13126666|gb|BG317236.1|BG317236
EST:     CCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: CCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211261818|gb|FK952008.1|FK952008
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACMC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|211085268|gb|FK951960.1|FK951960
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGCCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|67030555|gb|CO459304.1|CO459304
EST:     GCTCGAAGGAGAAGCNCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
EST: gi|27522123|gb|CA989229.1|CA989229
EST:     GCTCGAAGGAGAAGCCCACTCTTGG                         AGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC
genomic: GCTCGAAGGAGAAGCCCACTCTTGGgtaagactct ... attattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA
                             tttattttcctcaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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tttatgtttatactgtattggtagaacttatttggagagtttgcatggcagtattgcatgttcatgtaatccactttattttcctcaattattattgcagAGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-ttatgtt
- - - - - - -tgtattg
- - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtaa