Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttttttttggatcttgccatatcccttgaggaatcaaatggtaactgttctggaaaatcagttttgatcctagcgtatatactaatttggtaatggtgccttaagatctgttgctcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGCCTCTTTTCCTCTATAACTACACCACTCACCAGCTTCATGGGGTATTTGA

Basic information

species Zea mays
transcript GRMZM2G011923_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011923_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g41930.1 (Oryza sativa), 3'ss of exon 2
gtatgtctttttttttggatcttgccatatcccttgaggaatcaaatggta-actgttctggaaa---atcagttttgatcctagcgtatatactaatttggtaa-----tggtgccttaagatctgttgctcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGCCTCTTTTCCTCTATAACTACACCACTCACCAGCTTCATGGGGTATTTGA
        | | |  |  | ||| || ||||   |||   ||||  ||| | | ||||| |  ||   ||   |  || |  |  ||   ||    ||    |||     || |   | |  || | ||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||| || || ||||||||||||||||||||
-------gtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACCTCTTTTCCTCTATAACTACACGACCCATCAGCTTCATGGGGTATTTGA

upper sequence: GRMZM2G011923_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G27090.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtctttttttttggatcttgccatatcccttgaggaatcaaatggtaactgttctggaaaatcagttttgat-cctagcgtatatactaatttggtaatggtgccttaagatctgttgctcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGCCTCTTTTCCTCTATAACTACACCACTCACCAGCTTCATGGGGTATTTGA
                                                |||| |  ||   | |  |  || |  |   |  |  |||| | || |         |  |||     || |     || | |||| || ||  || ||||  | || || || || || || || |||||  ||||||| || || || ||||||||||||||||||||||||||  | |||||
------------------------------------------------gtaatt--tcccaatacccttttctagtgttttactgatattcaaactgcaagtaaataactttttgactttcatcattgttcagGTTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGATTGCCTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22490259|gb|BU050182.1|BU050182
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCAAGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149078427|gb|EE167203.2|EE167203
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|29544431|gb|CB604811.1|CB604811
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149080351|gb|EE169368.2|EE169368
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|31351065|gb|CD435422.1|CD435422
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|31352279|gb|CD436636.1|CD436636
EST:     CATGCAGGAGGACCTCAAGAGGCAGCTTTTT-                         GATTTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTG
genomic: CATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGA-TTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTG
EST: gi|149082226|gb|EE171409.2|EE171409
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTC
EST: gi|29544031|gb|CB604411.1|CB604411
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149107939|gb|EE292295.2|EE292295
EST:     GTCTGNCA-CAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GAT-GCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: GTCTG-CAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|87152915|gb|DY397704.1|DY397704
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCAAGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|31351868|gb|CD436225.1|CD436225
EST:     TGTCTGCAACAACGATACCATGGAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACCATAT
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATAT
EST: gi|31351326|gb|CD435683.1|CD435683
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|148982112|gb|EE028161.2|EE028161
EST:     GTTTTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: G-TCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149102032|gb|EE287514.2|EE287514
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|37399688|gb|CF637177.1|CF637177
EST:     CATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCAAGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: CATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149107040|gb|EE188934.2|EE188934
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGGCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149111905|gb|EE191062.2|EE191062
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|40303492|gb|CK347879.1|CK347879
EST:     TGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCAAGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|93282541|gb|EB674805.1|EB674805
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGGCA-TTACTCCTGGCCTG
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGG-CAATTACTCCTGGCCTG
EST: gi|31352510|gb|CD436867.1|CD436867
EST:     CAAGAGGCAG-TTTTTT                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: CAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|148982113|gb|EE028162.2|EE028162
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|149107300|gb|EE189181.2|EE189181
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGG
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGG
EST: gi|211413346|gb|FL280968.1|FL280968
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GATTGCCAGCAAGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGC
EST: gi|78087741|gb|DV516134.1|DV516134
EST:     TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTG                         GGAT-GCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTG
genomic: TGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtcttt ... tcttctgcagG-ATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagcgtatatactaatttggtaatggtgccttaagatctgttgctcttctgcagGATTGCCAGCACGATATCGTGATTCAGTCCGGGCAATTACTCCTGGCCTGCCTCTTTTCCTCTATAACTACACCACTCACCAGCTTCATGGGGTATTTGA
          tactaat  putative branch site (score: 1)
                                     tctgttgctcttct  putative PPT
      tatatactaattt  TA-rich tract