1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttctgtttgcattcttttggtagttttccccttggtagttgtgttcatagtgctgtaatgatttgaaggtgatctgtgtttattttctttgcattgtcagGGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTTCAGTATGCGGGCACTGAAGGAAAGCGCCATAGATTGCGAGAGGCAATGC
species | Zea mays |
transcript | GRMZM2G011912_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCTACCAGCAAGTATATTTTGTAGCGGCCATACATATTTTGTGCAG GGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTTEST: gi|160481658|gb|EY254228.1|EY254228
genomic: GAGTGCTACCAGCAAGTATATTTTGTAGCGGCCATACATATTTTGTGCAGgtaggagtat ... gcattgtcagGGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTT
EST: GAGTGCTACCAGCAAGTATATTTTGTAGCGGCCATACATATTTTGTGCAG GGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTT
genomic: GAGTGCTACCAGCAAGTATATTTTGTAGCGGCCATACATATTTTGTGCAGgtaggagtat ... gcattgtcagGGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTT
catagtgctgtaatgatttgaaggtgatctgtgtttattttctttgcattgtcagGGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTTCAGTATGCGGGCACTGAAGGAAAGCGCCATAGATTGCGAGAGGCAATGC
tttattttctttgc CT-rich tract
tgtttattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgtttgcattcttttggtagttttccccttggtagttgtgttcatagtgctgtaatgatttgaaggtgatctgtgtttattttctttgcattgtcagGGCATGTATAAGCAGCTTCATTTGGAACCATATGCTGTTCATACTACTTTTCAGTATGCGGGCACTGAAGGAAAGCGCCATAGATTGCGAGAGGCAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
ttctgtt
- - - -tgcattc
- - - - - - - ttttggt
- - - - - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - -gtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatctg