Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcgcttctaccgtgcgcaacaaacagtcctctgcccatcctacatttgcatcccactaaatgtctctgcttttggtttctcaacagTCTTCAGTTCGAAAG

Basic information

species Zea mays
transcript GRMZM2G011893_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211236234|gb|FL280787.1|FL280787
EST:     TGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGG                         TCTTCAGTTCGAAAG
genomic: TGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGGgtaatgttcg ... ttctcaacagTCTTCAGTTCGAAAG
EST: gi|211236233|gb|FL280786.1|FL280786
EST:     TGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGG                         TCTTCAGTTCGAAAG
genomic: TGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGGgtaatgttcg ... ttctcaacagTCTTCAGTTCGAAAG
EST: gi|211236235|gb|FL280788.1|FL280788
EST:     TGTACGCGGGAAATGACACGTTTTTCGAGTCCACTGGCCTCTACGGCAGG                         TCTTCAGTTCGAAAG
genomic: TGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGGgtaatgttcg ... ttctcaacagTCTTCAGTTCGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcccatcctacatttgcatcccactaaatgtctctgcttttggtttctcaacagTCTTCAGTTCGAAAG
                      cactaaa  putative branch site (score: 2)
                                            tttctc  putative PPT
         tacattt  TA-rich tract