1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcgaatgaaagttctgtttcgtcatctgctatgctgctgaatagtttcttaataatttagtgaattttgttctaactgtttccattccccaaagtgcagGCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACGCTCGCCTATGCCTTTGCGCTGATCTTGACAACTCAAAGCTTGGATATGG
species | Zea mays |
transcript | GRMZM2G011588_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTAATAAGCCTAGTGCGCACTTCAGTCATCAGCCAAGTGATTGAAAAGG GCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACGEST: gi|211331079|gb|FL338526.1|FL338526
genomic: TCTAATAAGCCTAGTGCGCACTTCAGTCATCAGCCAAGTGATTGAAAAGGgtattgatat ... caaagtgcagGCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACG
EST: TCTAATAAGTCTAGTGCGCACTTCAGTCATCAGCCAAGTGATTGAAAAGG GCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACG
genomic: TCTAATAAGCCTAGTGCGCACTTCAGTCATCAGCCAAGTGATTGAAAAGGgtattgatat ... caaagtgcagGCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACG
tttcttaataatttagtgaattttgttctaactgtttccattccccaaagtgcagGCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACGCTCGCCTATGCCTTTGCGCTGATCTTGACAACTCAAAGCTTGGATATGG
ttctaac putative branch site (score: 1)
ctgtttccattcccc CT-rich tract
taataatttagtgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgaatgaaagttctgtttcgtcatctgctatgctgctgaatagtttcttaataatttagtgaattttgttctaactgtttccattccccaaagtgcagGCAAGTCAGCTGAAATATTGGTTCCGAGGGCTCTGTAGTTGCTTATCCACGCTCGCCTATGCCTTTGCGCTGATCTTGACAACTCAAAGCTTGGATATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -gaatgaaa
- - - - - - -tctgttt
- - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt