1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgatttatatatcctaggtcttgatttatttacattgatttgtagtaaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG
species | Zea mays |
transcript | GRMZM2G011518_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGEST: gi|60357839|gb|DN224812.1|DN224812
genomic: GGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAG
EST: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGEST: gi|76285293|gb|DV024861.1|DV024861
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGEST: gi|78021761|gb|DV490148.1|DV490148
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: GCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGEST: gi|60337699|gb|DN204672.1|DN204672
genomic: GCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGEST: gi|76010832|gb|DT938002.1|DT938002
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGEST: gi|60399444|gb|DN232256.1|DN232256
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: CTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: CTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
taaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG
attattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttatatatcctaggtcttgatttatttacattgatttgtagtaaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG
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