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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggattttgatggtagctcaaaactttgttagcttgactgtctcatgcagcgttttccttttcgaagaaacaaaatgaattttggtgcacgtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGAGTTGTGAATCAAATTTTGCAAGGCCTGACCAATATGAAT

Basic information

species Zea mays
transcript GRMZM2G011456_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011456_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 3'ss of exon 2
--aggattttgatggtagctcaaaactttgttagcttgactgtctcatgcagcgttttccttttcgaagaaacaaaat--gaattttggtgcacgtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGAGTTGTGAATCAAATTTTGCAAGGCCTGACCAATATGAAT
  | |||||   |  | |        ||||  |||| ||||| | |||   || || |      |   |    ||     ||| ||   ||||  | | | ||||| || ||| ||||| | |||| |||||||| ||| | ||| ||||| |||||||||||||| ||||||||||||||||||||| || | 
ataagatttccttacttggcgtg---tttgggagctagactgacccatat-gcattcttgaaaacatggtctgaatcctagaaattgcatgcattttctttcagGCGTGCGTTCTTCCTCCTCCCAAGAGATCTTCTTGTGCCAACTATGCTAGAGTTGTGAATCATATTTTGCAAGGCCTGACCAATTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354427|gb|CD438784.1|CD438784
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTCTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211230907|gb|FL222476.1|FL222476
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTCTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|91876145|gb|EB406102.1|EB406102
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|71311078|gb|DR791853.1|DR791853
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|33468108|gb|CF245157.1|CF245157
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAG
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAG
EST: gi|71300983|gb|DR786520.1|DR786520
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211230912|gb|FL222481.1|FL222481
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|78117239|gb|DV535626.1|DV535626
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211230918|gb|FL222487.1|FL222487
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211230908|gb|FL222477.1|FL222477
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|149109143|gb|EE190035.2|EE190035
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211228853|gb|FL222474.1|FL222474
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTCTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|74233408|gb|DT641322.1|DT641322
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211230914|gb|FL222483.1|FL222483
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTCTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAGTTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|89762829|gb|DY690269.1|DY690269
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|71434207|gb|DR815257.1|DR815257
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|211230917|gb|FL222486.1|FL222486
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
EST: gi|89251153|gb|DY622939.1|DY622939
EST:     AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAG                         GCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATCGCTTGGGCATCTCACGTTTCGCTGCAGgtccagttgt ... gtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagcgttttccttttcgaagaaacaaaatgaattttggtgcacgtccatgcagGCATGTGTTATTCCTGCCCCCAGGAGATCTTTTTGCGGCAATTATGCCAGAGTTGTGAATCAAATTTTGCAAGGCCTGACCAATATGAAT
                      aaacaaaatgaatttt  TA-rich tract