1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttttttcttgaacggaatacattagtttaatgattttgtgccttgtttcaatagagttttgttctgtacatttccagGGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGCTGACAACAGTCATGTCCTATTTATAACTGTGATGGAAGGTGACATTAAGGTTTAAGTTGACC
species | Zea mays |
transcript | GRMZM2G011364_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGACAAACA GGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGTTGACAACAGTCATEST: gi|31360160|gb|CD444517.1|CD444517
genomic: TGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAACAgtgagttttt ... acatttccagGGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGCTGACAACAGTCAT
EST: TGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAACA GGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGCTGACAACAGTCAT
genomic: TGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAACAgtgagttttt ... acatttccagGGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGCTGACAACAGTCAT
tagtttaatgattttgtgccttgtttcaatagagttttgttctgtacatttccagGGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGCTGACAACAGTCATGTCCTATTTATAACTGTGATGGAAGGTGACATTAAGGTTTAAGTTGACC
gtttaat putative branch site (score: 139)
catttcc putative PPT
taatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttttttcttgaacggaatacattagtttaatgattttgtgccttgtttcaatagagttttgttctgtacatttccagGGGGAAATATTTGGATTCTGCAGATTCTCTAATAAGGCTGACAACAGTCATGTCCTATTTATAACTGTGATGGAAGGTGACATTAAGGTTTAAGTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG